Clone MXO02346 Report

Search the DGRC for MXO02346

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:46
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7115-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02346.3prime Sequence

728 bp (665 high quality bases) assembled on 2007-01-19

> MXO02346.3prime
ATGGTCTAGAAAGCTTGCTTTGGTTTTGATTGAATTCGAGCGTTGCACAA
CTGCAGGCGCAACTGGTTGAGATTTGGCTGGGACTTTTAGGGATTCTTCT
CCCGCTTTTCCCGCTGAGCTGCCAATCTTGTAGACATCGTTCTTGAAGAC
GATCACCAGCACGGTGATGTTGTCCACGGAGCCACGTTTATACGACTCCA
TGGCAAGTGATTTGGCGCCAAAGTCCGGCTCTTTCAGATGCTCCAACGCA
AAAGTGCAGGCCTCCTCATTGCTGAACGTGTCCCACAGCCCATCGGATGC
CAGTATCAGAAAATGGGGTTTGTGATCGTTTAGTTCGAAGGTCAAAATGT
CCGGCGTAGCAATCACCAGATTCTTATCTTTAAGCGGATAGTCCCCTAGA
GCACGTGACGTGGCCAACACCCCGGCCACACGCCAAACGCCTCGGAAGGC
GATGAATCCGCCTGCATCGTGGATTCTCTTTCGTTCTCGCACTTGCTGCG
GCTTGTGATCGAATGAAAGCGGTATGGCGATTCCACGCCAGTCGTACATG
ACTCCGCGGGAGTCGCCCACATTGGCCACAATCAGCTTTGAGCCCTGAAC
TATCGCTATTAGAGCGGTGGTTCCCGCAATGTTGGTCGCTCTCTTGGCCT
GCTCCACAAGCTTGTAGTCGGCCGACATGATCTCGTCCGTGATCAGTTTA
CCAAAGTTAATACGTCCGTGTTCGATGT

MXO02346.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7115-PA 1575 CG7115-RA 863..1572 728..19 3550 100 Minus
CG7115-PB 1575 CG7115-RB 863..1572 728..19 3550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7115-RE 2612 CG7115-RE 1433..2142 728..19 3550 100 Minus
CG7115-RD 2001 CG7115-RD 822..1531 728..19 3550 100 Minus
CG7115-RC 1995 CG7115-RC 816..1525 728..19 3550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7824580..7824880 319..19 1505 100 Minus
2L 23513712 2L 7824087..7824351 637..373 1325 100 Minus
2L 23513712 2L 7823937..7824028 728..637 460 100 Minus
2L 23513712 2L 7824426..7824480 374..320 275 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:26:13 has no hits.

MXO02346.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:34 Download gff for MXO02346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7115-PB 863..1575 16..728 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:47 Download gff for MXO02346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7115-RC 816..1529 15..728 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:55 Download gff for MXO02346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7115-RC 816..1529 15..728 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:55 Download gff for MXO02346.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7824580..7824884 15..319 99   Minus
2L 7823937..7824028 637..728 100 -> Minus
2L 7824088..7824351 373..636 100 -> Minus
2L 7824428..7824480 320..372 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:47 Download gff for MXO02346.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7824580..7824884 15..319 99   Minus
arm_2L 7823937..7824028 637..728 100 -> Minus
arm_2L 7824088..7824351 373..636 100 -> Minus
arm_2L 7824428..7824480 320..372 100 -> Minus

MXO02346.5prime Sequence

702 bp (700 high quality bases) assembled on 2007-01-19

> MXO02346.5prime
CAGTCGACATGGACGACGAACTGGAAGACAAGGTGTTCTATCAGACATAC
GTATCGCACATGAAAATCCTGTCCAAATTTGCGGTGGGCTTCTCGTCCAT
CAACTCCCCGCTGGCCTACATATGGAAGCTGTGCCGACTGTATGTCCTTC
GGCCGGAGGTCATCTTCTGCGGCTTGATCCTCTTCGTCCTGTTGCTCTAT
TTGCAAGCGGTAGATGTGTGGAGTCGCAGCATCCTGGGACGCATCCAGGC
AACCCTCGGTCGCCAGAAGGCCGTCAAGATGATGGAGCTGTCGGCCAGTG
CTGGTGATCACCAGAGCTGGGAGGAGATGAAGCAGCAGAGCTCGGCCTTC
GCGGTCCTGGGACGCAGGCCAAGAATGGAGGATAGGTTTATTATCGAGGA
GAACATCAACAACAACACTGGTATCTCCTTCTTTGCCGTATTTGACGGTC
ATGGCGGCGAGTTTGCCGCAGACTTCGCCAAGGATGTGCTGGTGAAGAAC
ATCTACAATAAGATCATCGAGATGTCCAAGCTTCTGAAGACGGAAGGAAA
TTCCGGAGATTACGATAAGAGTCCCTATTTAGCGCGCAAGCAGAGTCGCA
AGGATGCAAACAAGGAGAACACAGAACCGACGGCAGGGGTGATGCGAAAG
GATAGTCTAAGGAAGGCCCACAGCACCACGGCGGATTGTAGTGCTATTAA
GC

MXO02346.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7115-PA 1575 CG7115-RA 1..694 9..702 3470 100 Plus
CG7115-PB 1575 CG7115-RB 1..694 9..702 3470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7115-RE 2612 CG7115-RE 570..1264 8..702 3475 100 Plus
CG7115-RB 2238 CG7115-RB 196..890 8..702 3475 100 Plus
CG7115-RA 2646 CG7115-RA 604..1298 8..702 3475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7822723..7823103 8..388 1905 100 Plus
2L 23513712 2L 7823449..7823768 383..702 1600 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:26:21 has no hits.

MXO02346.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:35 Download gff for MXO02346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7115-PB 1..694 9..702 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:49 Download gff for MXO02346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7115-RA 597..1298 1..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:59 Download gff for MXO02346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7115-RA 597..1298 1..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:59 Download gff for MXO02346.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7822716..7823100 1..385 98 -> Plus
2L 7823452..7823768 386..702 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:49 Download gff for MXO02346.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7822716..7823100 1..385 98 -> Plus
arm_2L 7823452..7823768 386..702 100   Plus