MXO02346.3prime Sequence
728 bp (665 high quality bases) assembled on 2007-01-19
> MXO02346.3prime
ATGGTCTAGAAAGCTTGCTTTGGTTTTGATTGAATTCGAGCGTTGCACAA
CTGCAGGCGCAACTGGTTGAGATTTGGCTGGGACTTTTAGGGATTCTTCT
CCCGCTTTTCCCGCTGAGCTGCCAATCTTGTAGACATCGTTCTTGAAGAC
GATCACCAGCACGGTGATGTTGTCCACGGAGCCACGTTTATACGACTCCA
TGGCAAGTGATTTGGCGCCAAAGTCCGGCTCTTTCAGATGCTCCAACGCA
AAAGTGCAGGCCTCCTCATTGCTGAACGTGTCCCACAGCCCATCGGATGC
CAGTATCAGAAAATGGGGTTTGTGATCGTTTAGTTCGAAGGTCAAAATGT
CCGGCGTAGCAATCACCAGATTCTTATCTTTAAGCGGATAGTCCCCTAGA
GCACGTGACGTGGCCAACACCCCGGCCACACGCCAAACGCCTCGGAAGGC
GATGAATCCGCCTGCATCGTGGATTCTCTTTCGTTCTCGCACTTGCTGCG
GCTTGTGATCGAATGAAAGCGGTATGGCGATTCCACGCCAGTCGTACATG
ACTCCGCGGGAGTCGCCCACATTGGCCACAATCAGCTTTGAGCCCTGAAC
TATCGCTATTAGAGCGGTGGTTCCCGCAATGTTGGTCGCTCTCTTGGCCT
GCTCCACAAGCTTGTAGTCGGCCGACATGATCTCGTCCGTGATCAGTTTA
CCAAAGTTAATACGTCCGTGTTCGATGT
MXO02346.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7115-PA | 1575 | CG7115-RA | 863..1572 | 728..19 | 3550 | 100 | Minus |
CG7115-PB | 1575 | CG7115-RB | 863..1572 | 728..19 | 3550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7115-RE | 2612 | CG7115-RE | 1433..2142 | 728..19 | 3550 | 100 | Minus |
CG7115-RD | 2001 | CG7115-RD | 822..1531 | 728..19 | 3550 | 100 | Minus |
CG7115-RC | 1995 | CG7115-RC | 816..1525 | 728..19 | 3550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7824580..7824880 | 319..19 | 1505 | 100 | Minus |
2L | 23513712 | 2L | 7824087..7824351 | 637..373 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 7823937..7824028 | 728..637 | 460 | 100 | Minus |
2L | 23513712 | 2L | 7824426..7824480 | 374..320 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:13 has no hits.
MXO02346.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:34 Download gff for
MXO02346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7115-PB | 863..1575 | 16..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:47 Download gff for
MXO02346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7115-RC | 816..1529 | 15..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:55 Download gff for
MXO02346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7115-RC | 816..1529 | 15..728 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:55 Download gff for
MXO02346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7824580..7824884 | 15..319 | 99 | | Minus |
2L | 7823937..7824028 | 637..728 | 100 | -> | Minus |
2L | 7824088..7824351 | 373..636 | 100 | -> | Minus |
2L | 7824428..7824480 | 320..372 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:47 Download gff for
MXO02346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7824580..7824884 | 15..319 | 99 | | Minus |
arm_2L | 7823937..7824028 | 637..728 | 100 | -> | Minus |
arm_2L | 7824088..7824351 | 373..636 | 100 | -> | Minus |
arm_2L | 7824428..7824480 | 320..372 | 100 | -> | Minus |
MXO02346.5prime Sequence
702 bp (700 high quality bases) assembled on 2007-01-19
> MXO02346.5prime
CAGTCGACATGGACGACGAACTGGAAGACAAGGTGTTCTATCAGACATAC
GTATCGCACATGAAAATCCTGTCCAAATTTGCGGTGGGCTTCTCGTCCAT
CAACTCCCCGCTGGCCTACATATGGAAGCTGTGCCGACTGTATGTCCTTC
GGCCGGAGGTCATCTTCTGCGGCTTGATCCTCTTCGTCCTGTTGCTCTAT
TTGCAAGCGGTAGATGTGTGGAGTCGCAGCATCCTGGGACGCATCCAGGC
AACCCTCGGTCGCCAGAAGGCCGTCAAGATGATGGAGCTGTCGGCCAGTG
CTGGTGATCACCAGAGCTGGGAGGAGATGAAGCAGCAGAGCTCGGCCTTC
GCGGTCCTGGGACGCAGGCCAAGAATGGAGGATAGGTTTATTATCGAGGA
GAACATCAACAACAACACTGGTATCTCCTTCTTTGCCGTATTTGACGGTC
ATGGCGGCGAGTTTGCCGCAGACTTCGCCAAGGATGTGCTGGTGAAGAAC
ATCTACAATAAGATCATCGAGATGTCCAAGCTTCTGAAGACGGAAGGAAA
TTCCGGAGATTACGATAAGAGTCCCTATTTAGCGCGCAAGCAGAGTCGCA
AGGATGCAAACAAGGAGAACACAGAACCGACGGCAGGGGTGATGCGAAAG
GATAGTCTAAGGAAGGCCCACAGCACCACGGCGGATTGTAGTGCTATTAA
GC
MXO02346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7115-PA | 1575 | CG7115-RA | 1..694 | 9..702 | 3470 | 100 | Plus |
CG7115-PB | 1575 | CG7115-RB | 1..694 | 9..702 | 3470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7115-RE | 2612 | CG7115-RE | 570..1264 | 8..702 | 3475 | 100 | Plus |
CG7115-RB | 2238 | CG7115-RB | 196..890 | 8..702 | 3475 | 100 | Plus |
CG7115-RA | 2646 | CG7115-RA | 604..1298 | 8..702 | 3475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7822723..7823103 | 8..388 | 1905 | 100 | Plus |
2L | 23513712 | 2L | 7823449..7823768 | 383..702 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:21 has no hits.
MXO02346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:35 Download gff for
MXO02346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7115-PB | 1..694 | 9..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:49 Download gff for
MXO02346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7115-RA | 597..1298 | 1..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:59 Download gff for
MXO02346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7115-RA | 597..1298 | 1..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:59 Download gff for
MXO02346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7822716..7823100 | 1..385 | 98 | -> | Plus |
2L | 7823452..7823768 | 386..702 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:49 Download gff for
MXO02346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7822716..7823100 | 1..385 | 98 | -> | Plus |
arm_2L | 7823452..7823768 | 386..702 | 100 | | Plus |