MXO02347.3prime Sequence
677 bp (543 high quality bases) assembled on 2007-01-19
> MXO02347.3prime
ATGGTCTAGAAAGCTTGCCAACAGCTTCGGCTGGTTCCTGATATTCTCCA
AGTCCAGTTGAATATGTGGCGAAGGGGCGGTCGCCGCCATGGGAGATTGT
GGACACACCGGCTCCAGTTGCTCCTCGGGCAGCAGACGGTATTTTTTGAG
ATACTTGTACGAAGCATTGGATATGTCGTTTGGACTCTGCGCGTGGCCTA
TGTTGTCGATCGGACGCAGTGGCTCTGGATTAGGGGACTTCGGCGACGCC
CCCAGGCGCATATCCTTCATCAACTCATCCACTGGCTGGCGCAAGTATTT
CAGCGCCAGCTCGTTCATCACCATGCTCTTCTCGGTGTTGGGCTTGGCCA
GTTGAGGGATCCGCTTCGCCTGAGGCGTATTGGCCCGCCACCCCGTAGAT
TGGGCGATCGGCGGATGTGGTCGAGGAGACGGAAACTGAGGAATCACTCG
TGCTTGTGGCGGCGGCAATGGTTCCTCCTCCTCTGCTATGTAATCCTGCA
TAATGGGAGACAAGCGTCTACCTGCTTGATTGGTGGTCAGAATATCCGAC
TGGGTGCCAGTGGTACTGCTGGCTTTTGAAATGGCTTCGGGTTTCGCTCG
CTGCTGTTGCTCCAAAATCATCTCGCAAAGATTCCGAAGCTGTTGCTGCT
CATGGCGCGCGGACTCCACAAGGGATA
MXO02347.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8262-PA | 1263 | CG8262-RA | 892..1260 | 387..19 | 1845 | 100 | Minus |
| CG8262-PA | 1263 | CG8262-RA | 602..887 | 677..392 | 1330 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1432 | CG8262-RA | 693..1351 | 677..19 | 3190 | 98.9 | Minus |
| ana2-RB | 1429 | CG8262-RB | 693..1348 | 677..19 | 3135 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8898810..8899317 | 19..526 | 2495 | 99.4 | Plus |
| 2R | 25286936 | 2R | 8899367..8899519 | 525..677 | 705 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:33:51 has no hits.
MXO02347.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:35 Download gff for
MXO02347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 603..1263 | 16..676 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:21 Download gff for
MXO02347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 694..1363 | 7..676 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:34 Download gff for
MXO02347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 694..1363 | 7..676 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:34 Download gff for
MXO02347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8899367..8899518 | 525..676 | 97 | | Plus |
| 2R | 8898798..8899315 | 7..524 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:21 Download gff for
MXO02347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4786303..4786820 | 7..524 | 98 | <- | Plus |
| arm_2R | 4786872..4787023 | 525..676 | 97 | | Plus |
MXO02347.5prime Sequence
429 bp (371 high quality bases) assembled on 2007-01-19
> MXO02347.5prime
CAGTCGACATGTTTGTTCCCGAAACGGAGGATATGCTGCCCAGACTAGCG
CCCAGGCCGAGTGCAGCAGTGCCCATGGGCCACACCAATGAGATTATAGG
GCCCACCGTGCCGGAGGTATCCATATTGTTTGGCCAGCCGCCGCAGGATC
CGCAGATGCAGCCGCAGCAGCCAAATCATGCACATCAGGAGTCATCCCCT
CGTGCTGCACCCACCTTCGCGTCCTGGAAGAAGCAAATGCTGCCCAGGGT
CAACTTTTCGCCCATTTTGGCCACAGAACTGGGTCCTCGCACCGCTCCCA
GCAGCAATAGTCCGTGCTCCTCGAAGGAATACCAAGTAATGCCCCGGGAT
CGCAACTATGCAAGCGATGCGCATCAGACTACCAATCATATGAACTGCAA
TGCTGGTGGCTATAATGCCGAGCCCCAAG
MXO02347.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8262-PA | 1263 | CG8262-RA | 1..417 | 9..425 | 2060 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RB | 1429 | CG8262-RB | 92..508 | 9..425 | 2070 | 99.8 | Plus |
| ana2-RA | 1432 | CG8262-RA | 92..508 | 9..425 | 2070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8899704..8900120 | 425..9 | 2070 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:57 has no hits.
MXO02347.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:36 Download gff for
MXO02347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 1..420 | 9..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:49 Download gff for
MXO02347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 84..511 | 1..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:31 Download gff for
MXO02347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 84..511 | 1..429 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:31 Download gff for
MXO02347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8899701..8900126 | 1..429 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:49 Download gff for
MXO02347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4787206..4787631 | 1..429 | 98 | | Minus |
