Clone Sequence Records
MXO02349.3prime Sequence
468 bp (468 high quality bases) assembled on 2007-01-19
> MXO02349.3prime
ATGGTCTAGAAAGCTTGCCTGATACGCGTTCAGATTCTTTTTGGGCAAGA
TGATGTTGTAATGCTGGAATTTGGTCCAAGACAGCAGTATGTCCTTCGTC
CTGCCGTGCGGCGCCTCCCCAAAAGTCTTGCAGCACCCGTAAATTTTCAT
TACTTTCTTGTCCTCCTTGTTGCTGATGAACCCTCCACCCAGGCATTTGG
CGCAAATTCCAATTTTGTCCATCTCCTTTTGGATTTCCTCAAAGATTTCC
TCGTGGTCCTTGGAGGCGGATCCTCTTACAATGGTCCTGCCGAACCTAGT
TAAACCGTGCATGTGAATCATCATCAAAAGGTACTTGTTCTTGCCTTTAG
AAAGCTGAACTCTAGGAACATTTATCAAAAGGGCGTTTACGCGCGAAGAA
CTTTGCCTTCGAAGGGGCTTCAACAATTGTGAAACAGGTGCCAAAAGATT
CAAGGTTTTCATGTCGAC
MXO02349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7929-PA | 447 | ocn-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ocn-RA | 619 | CG7929-RA | 86..529 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30037435..30037645 | 252..462 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 30037256..30037381 | 127..252 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 30037093..30037202 | 19..128 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:18 has no hits.
MXO02349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:37 Download gff for
MXO02349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7929-PA | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:56 Download gff for
MXO02349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ocn-RA | 79..539 | 10..468 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:27 Download gff for
MXO02349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ocn-RA | 79..539 | 10..468 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:27 Download gff for
MXO02349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30037082..30037200 | 10..126 | 96 | <- | Plus |
| 3R | 30037256..30037380 | 127..251 | 100 | <- | Plus |
| 3R | 30037435..30037649 | 252..468 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:56 Download gff for
MXO02349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25862804..25862922 | 10..126 | 96 | <- | Plus |
| arm_3R | 25862978..25863102 | 127..251 | 100 | <- | Plus |
| arm_3R | 25863157..25863371 | 252..468 | 98 | | Plus |
MXO02349.5prime Sequence
468 bp (468 high quality bases) assembled on 2007-01-19
> MXO02349.5prime
CAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCACAATTGTTG
AAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTTTTGATAAA
TGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCTTTTGATGA
TGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTGTAAGAGGA
TCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAAAAGGAGAT
GGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTTCATCAGCA
ACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCAAGACTTTT
GGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCTTGGACCAA
ATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAACGCGTATC
AGGCAAGCTTTCTAGACC
MXO02349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7929-PA | 447 | ocn-RA | 1..444 | 9..452 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ocn-RA | 619 | CG7929-RA | 86..529 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30037435..30037645 | 219..9 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 30037256..30037381 | 344..219 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 30037093..30037202 | 452..343 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:31 has no hits.
MXO02349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:37 Download gff for
MXO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7929-PA | 1..447 | 9..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:37 Download gff for
MXO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ocn-RA | 86..539 | 9..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:21 Download gff for
MXO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ocn-RA | 86..539 | 9..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:21 Download gff for
MXO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30037082..30037200 | 345..461 | 96 | <- | Minus |
| 3R | 30037256..30037380 | 220..344 | 100 | <- | Minus |
| 3R | 30037435..30037645 | 9..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:37 Download gff for
MXO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25862804..25862922 | 345..461 | 96 | <- | Minus |
| arm_3R | 25862978..25863102 | 220..344 | 100 | <- | Minus |
| arm_3R | 25863157..25863367 | 9..219 | 100 | | Minus |
