MXO02350.3prime Sequence
705 bp (631 high quality bases) assembled on 2007-01-19
> MXO02350.3prime
ATGGTCTAGAAAGCTTGCTTGTTGTGCCGCGGTCAAGGCCAAAACGGTGA
AGCGCACTTCGTTGGGATCGCGAGCCATGAACTCCTTGCAGACCTTGGCC
GCATCCTTCACAAAAGTCTCCTCCGAAGTCGGTCCGTGCTTGATCGGGAA
GGACTTGCGGCCATCCAGCTCGTACAGAGTACCCTCCTTGTTCACCAGTG
CGATGAAGTGGTGGATCACCTTCTCATGATTGGCGGCATTCGTCTGGCCC
TCTTGAGCCAAGGCCTCATGATCGGCGGTGAACTTCTCGTCTTTTTCGAG
GGCCCGTCCGCGTTCCTCCGGGGACAAGGAAGCTGTCTTCTCCAGGAAGT
CCTTCAGTACTCCGCGGTCAATGTCCACTTCTTTGTTGTTGGCCACGCTG
TGGATCAGGGCGACGGTTCCACAGGCGTTGTGGGTGAACTGGCGCATGTA
GAAGAGATCCTCGGGATGCTGCTCCTCCACCTCCTTAATCCGATCGTGCT
CCTCGGCGCGGTGCTTCTCATAGGTTTCGCTGCACGGGAAGAGCAAAATG
AACGCCTTTACGGGACGCGGAATCCATTCCAAGGTGTCATCTTCCAATCC
AATGACGTCAGTTACCGACCAGGCTGGCGACACGCCCAGTTTATGTATGT
ACTTGGTCAAAACCTCGGGATTAGATTCAAGTGGCGTCCCAGTTAACATG
TCGAC
MXO02350.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4265-PA | 684 | Uch-RA | 11..681 | 689..19 | 3355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..809 | 699..19 | 3375 | 99.7 | Minus |
Uch-RA | 1196 | CG4265-RA | 281..961 | 699..19 | 3375 | 99.7 | Minus |
Uch-RC | 1035 | CG4265-RC | 129..800 | 699..19 | 3230 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212973..2213333 | 19..379 | 1805 | 100 | Plus |
2L | 23513712 | 2L | 2213415..2213557 | 380..522 | 715 | 100 | Plus |
2L | 23513712 | 2L | 2213616..2213758 | 523..665 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:01 has no hits.
MXO02350.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:37 Download gff for
MXO02350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4265-PA | 1..684 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:57 Download gff for
MXO02350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 19..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:40 Download gff for
MXO02350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 19..699 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:40 Download gff for
MXO02350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2212973..2213333 | 19..379 | 100 | <- | Plus |
2L | 2213415..2213557 | 380..522 | 100 | <- | Plus |
2L | 2213616..2213756 | 523..663 | 100 | <- | Plus |
2L | 2213896..2213931 | 664..699 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:57 Download gff for
MXO02350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2212973..2213333 | 19..379 | 100 | <- | Plus |
arm_2L | 2213415..2213557 | 380..522 | 100 | <- | Plus |
arm_2L | 2213616..2213756 | 523..663 | 100 | <- | Plus |
arm_2L | 2213896..2213931 | 664..699 | 94 | | Plus |
MXO02350.5prime Sequence
705 bp (705 high quality bases) assembled on 2007-01-19
> MXO02350.5prime
CAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCGAGGTTTTG
ACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCGGTAACTGA
CGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCGTCCCGTAA
AGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGAAGCACCGC
GCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCATCCCGAGGA
TCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAACCGTCGCCC
TGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACCGCGGAGTA
CTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAGGAACGCGG
ACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGAGGCCTTGG
CTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGATCCACCAC
TTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTGGATGGCCG
CAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGACTTTTGTGA
AGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATCCCAACGAA
GTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAAGCAAGCTTTCT
AGACC
MXO02350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4265-PA | 684 | Uch-RA | 1..681 | 9..689 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..809 | 9..689 | 3405 | 100 | Plus |
Uch-RA | 1196 | CG4265-RA | 281..961 | 9..689 | 3405 | 100 | Plus |
Uch-RC | 1035 | CG4265-RC | 129..800 | 9..689 | 3260 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212973..2213333 | 689..329 | 1805 | 100 | Minus |
2L | 23513712 | 2L | 2213415..2213557 | 328..186 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213616..2213758 | 185..43 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213894..2213931 | 46..9 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:34 has no hits.
MXO02350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:38 Download gff for
MXO02350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4265-PA | 1..684 | 9..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:39 Download gff for
MXO02350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 9..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:22 Download gff for
MXO02350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 9..689 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:22 Download gff for
MXO02350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2213616..2213756 | 45..185 | 100 | <- | Minus |
2L | 2213896..2213931 | 9..44 | 100 | | Minus |
2L | 2212973..2213333 | 329..689 | 100 | <- | Minus |
2L | 2213415..2213557 | 186..328 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:39 Download gff for
MXO02350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2212973..2213333 | 329..689 | 100 | <- | Minus |
arm_2L | 2213415..2213557 | 186..328 | 100 | <- | Minus |
arm_2L | 2213616..2213756 | 45..185 | 100 | <- | Minus |
arm_2L | 2213896..2213931 | 9..44 | 100 | | Minus |