Clone MXO02350 Report

Search the DGRC for MXO02350

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:50
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptUch-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02350.3prime Sequence

705 bp (631 high quality bases) assembled on 2007-01-19

> MXO02350.3prime
ATGGTCTAGAAAGCTTGCTTGTTGTGCCGCGGTCAAGGCCAAAACGGTGA
AGCGCACTTCGTTGGGATCGCGAGCCATGAACTCCTTGCAGACCTTGGCC
GCATCCTTCACAAAAGTCTCCTCCGAAGTCGGTCCGTGCTTGATCGGGAA
GGACTTGCGGCCATCCAGCTCGTACAGAGTACCCTCCTTGTTCACCAGTG
CGATGAAGTGGTGGATCACCTTCTCATGATTGGCGGCATTCGTCTGGCCC
TCTTGAGCCAAGGCCTCATGATCGGCGGTGAACTTCTCGTCTTTTTCGAG
GGCCCGTCCGCGTTCCTCCGGGGACAAGGAAGCTGTCTTCTCCAGGAAGT
CCTTCAGTACTCCGCGGTCAATGTCCACTTCTTTGTTGTTGGCCACGCTG
TGGATCAGGGCGACGGTTCCACAGGCGTTGTGGGTGAACTGGCGCATGTA
GAAGAGATCCTCGGGATGCTGCTCCTCCACCTCCTTAATCCGATCGTGCT
CCTCGGCGCGGTGCTTCTCATAGGTTTCGCTGCACGGGAAGAGCAAAATG
AACGCCTTTACGGGACGCGGAATCCATTCCAAGGTGTCATCTTCCAATCC
AATGACGTCAGTTACCGACCAGGCTGGCGACACGCCCAGTTTATGTATGT
ACTTGGTCAAAACCTCGGGATTAGATTCAAGTGGCGTCCCAGTTAACATG
TCGAC

MXO02350.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4265-PA 684 Uch-RA 11..681 689..19 3355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-RB 1044 CG4265-RB 129..809 699..19 3375 99.7 Minus
Uch-RA 1196 CG4265-RA 281..961 699..19 3375 99.7 Minus
Uch-RC 1035 CG4265-RC 129..800 699..19 3230 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2212973..2213333 19..379 1805 100 Plus
2L 23513712 2L 2213415..2213557 380..522 715 100 Plus
2L 23513712 2L 2213616..2213758 523..665 715 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:32:01 has no hits.

MXO02350.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:37 Download gff for MXO02350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4265-PA 1..684 18..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:57 Download gff for MXO02350.3prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..961 19..699 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:40 Download gff for MXO02350.3prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..961 19..699 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:40 Download gff for MXO02350.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2212973..2213333 19..379 100 <- Plus
2L 2213415..2213557 380..522 100 <- Plus
2L 2213616..2213756 523..663 100 <- Plus
2L 2213896..2213931 664..699 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:57 Download gff for MXO02350.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2212973..2213333 19..379 100 <- Plus
arm_2L 2213415..2213557 380..522 100 <- Plus
arm_2L 2213616..2213756 523..663 100 <- Plus
arm_2L 2213896..2213931 664..699 94   Plus

MXO02350.5prime Sequence

705 bp (705 high quality bases) assembled on 2007-01-19

> MXO02350.5prime
CAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCGAGGTTTTG
ACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCGGTAACTGA
CGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCGTCCCGTAA
AGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGAAGCACCGC
GCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCATCCCGAGGA
TCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAACCGTCGCCC
TGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACCGCGGAGTA
CTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAGGAACGCGG
ACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGAGGCCTTGG
CTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGATCCACCAC
TTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTGGATGGCCG
CAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGACTTTTGTGA
AGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATCCCAACGAA
GTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAAGCAAGCTTTCT
AGACC

MXO02350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4265-PA 684 Uch-RA 1..681 9..689 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-RB 1044 CG4265-RB 129..809 9..689 3405 100 Plus
Uch-RA 1196 CG4265-RA 281..961 9..689 3405 100 Plus
Uch-RC 1035 CG4265-RC 129..800 9..689 3260 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2212973..2213333 689..329 1805 100 Minus
2L 23513712 2L 2213415..2213557 328..186 715 100 Minus
2L 23513712 2L 2213616..2213758 185..43 715 100 Minus
2L 23513712 2L 2213894..2213931 46..9 190 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:46:34 has no hits.

MXO02350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:38 Download gff for MXO02350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4265-PA 1..684 9..690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:39 Download gff for MXO02350.5prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..961 9..689 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:22 Download gff for MXO02350.5prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..961 9..689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:22 Download gff for MXO02350.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2213616..2213756 45..185 100 <- Minus
2L 2213896..2213931 9..44 100   Minus
2L 2212973..2213333 329..689 100 <- Minus
2L 2213415..2213557 186..328 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:39 Download gff for MXO02350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2212973..2213333 329..689 100 <- Minus
arm_2L 2213415..2213557 186..328 100 <- Minus
arm_2L 2213616..2213756 45..185 100 <- Minus
arm_2L 2213896..2213931 9..44 100   Minus