MXO02351.3prime Sequence
645 bp (574 high quality bases) assembled on 2007-01-19
> MXO02351.3prime
ATGGTCTAGAAAGCTTGCAGTGGACTTTTTCTCAGCATTCTCCAGTTTGA
CGGCGCGCTTGGCCATGATCCAAAAGTAGAGACTCGGGCAAAGATGACGA
AGATAGTAGGCGATCTTGGCCTGGACATCGCTGACAATAATGTCCGGTTC
TTTGCGAAGAATGCACTGCAGAATGCGTTCTGCAAGTTTATCCGGTGACA
TGCCCTTGGCCGTGGTTTCATCCACTTTGCCGTAACTGCTTCCCGATCCT
GTCAATGCATTCAAGGACAGCTGGGTGCGTATGTAGCCAGGACTCACGCA
GGACACGTTTATGTTCTTATTTGCCACCTCGGCTCGCAGGGAATCGGCAA
AAGCCTGCATGGCATGTTTCGAGGCGGAATAGGCAGCCCCCCGGGGAATG
GCAAACTTTCCCTGAACAGAGCTAATGAAGCATATGTGACCACTACCACG
TTTCACCATCGAAGGAAGTAGAGCTTTGGTCAGGGCAACGCTGCCAAAGT
AGTTAACCACCATCACCTTGAGATCCACATCCACTGCCGTGGATGCCACA
TCGGCTCGCACACTGATCCCTCCGTTGCTGATGAGTATGTCCACTTGGTT
GTACACGGCCAGCACCCGGGTGACAAATTCTGGAAAGGAGTTCAG
MXO02351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 981 | CG7601-RA | 608..978 | 389..19 | 1855 | 100 | Minus |
CG7601-PA | 981 | CG7601-RA | 352..604 | 645..393 | 1215 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 446..1072 | 645..19 | 3060 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29735714..29735961 | 228..475 | 1195 | 98.8 | Plus |
3R | 32079331 | 3R | 29735447..29735655 | 19..227 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 29736016..29736187 | 474..645 | 830 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:01 has no hits.
MXO02351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:38 Download gff for
MXO02351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 352..981 | 16..645 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:10 Download gff for
MXO02351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 446..1079 | 11..645 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:49 Download gff for
MXO02351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 446..1079 | 11..645 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:49 Download gff for
MXO02351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29735440..29735655 | 11..227 | 98 | <- | Plus |
3R | 29735714..29735959 | 228..473 | 98 | <- | Plus |
3R | 29736016..29736187 | 474..645 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:10 Download gff for
MXO02351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25561162..25561377 | 11..227 | 98 | <- | Plus |
arm_3R | 25561436..25561681 | 228..473 | 98 | <- | Plus |
arm_3R | 25561738..25561909 | 474..645 | 98 | | Plus |
MXO02351.5prime Sequence
353 bp (304 high quality bases) assembled on 2007-01-19
> MXO02351.5prime
CAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCAGCAGCGAC
TGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCGGTGGCACT
TCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCAGAAATTCC
GCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCAGTTCGGGC
CTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGCAGGGTTAT
TTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAAGGACCTCC
TCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTCCCCTGGAT
CTG
MXO02351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 981 | CG7601-RA | 1..345 | 9..353 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 95..439 | 9..353 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29736487..29736651 | 173..9 | 825 | 100 | Minus |
3R | 32079331 | 3R | 29736289..29736435 | 315..169 | 735 | 100 | Minus |
3R | 32079331 | 3R | 29736194..29736233 | 353..314 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:36 has no hits.
MXO02351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:39 Download gff for
MXO02351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 1..345 | 9..353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:58 Download gff for
MXO02351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..439 | 9..353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:02 Download gff for
MXO02351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..439 | 9..353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:02 Download gff for
MXO02351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29736490..29736651 | 9..170 | 100 | | Minus |
3R | 29736194..29736232 | 315..353 | 100 | <- | Minus |
3R | 29736290..29736433 | 171..314 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:58 Download gff for
MXO02351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25562212..25562373 | 9..170 | 100 | | Minus |
arm_3R | 25561916..25561954 | 315..353 | 100 | <- | Minus |
arm_3R | 25562012..25562155 | 171..314 | 100 | <- | Minus |