Clone MXO02351 Report

Search the DGRC for MXO02351

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:51
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7601-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02351.3prime Sequence

645 bp (574 high quality bases) assembled on 2007-01-19

> MXO02351.3prime
ATGGTCTAGAAAGCTTGCAGTGGACTTTTTCTCAGCATTCTCCAGTTTGA
CGGCGCGCTTGGCCATGATCCAAAAGTAGAGACTCGGGCAAAGATGACGA
AGATAGTAGGCGATCTTGGCCTGGACATCGCTGACAATAATGTCCGGTTC
TTTGCGAAGAATGCACTGCAGAATGCGTTCTGCAAGTTTATCCGGTGACA
TGCCCTTGGCCGTGGTTTCATCCACTTTGCCGTAACTGCTTCCCGATCCT
GTCAATGCATTCAAGGACAGCTGGGTGCGTATGTAGCCAGGACTCACGCA
GGACACGTTTATGTTCTTATTTGCCACCTCGGCTCGCAGGGAATCGGCAA
AAGCCTGCATGGCATGTTTCGAGGCGGAATAGGCAGCCCCCCGGGGAATG
GCAAACTTTCCCTGAACAGAGCTAATGAAGCATATGTGACCACTACCACG
TTTCACCATCGAAGGAAGTAGAGCTTTGGTCAGGGCAACGCTGCCAAAGT
AGTTAACCACCATCACCTTGAGATCCACATCCACTGCCGTGGATGCCACA
TCGGCTCGCACACTGATCCCTCCGTTGCTGATGAGTATGTCCACTTGGTT
GTACACGGCCAGCACCCGGGTGACAAATTCTGGAAAGGAGTTCAG

MXO02351.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-PA 981 CG7601-RA 608..978 389..19 1855 100 Minus
CG7601-PA 981 CG7601-RA 352..604 645..393 1215 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-RA 1250 CG7601-RA 446..1072 645..19 3060 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29735714..29735961 228..475 1195 98.8 Plus
3R 32079331 3R 29735447..29735655 19..227 1045 100 Plus
3R 32079331 3R 29736016..29736187 474..645 830 98.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:30:01 has no hits.

MXO02351.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:38 Download gff for MXO02351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-PA 352..981 16..645 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:10 Download gff for MXO02351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 446..1079 11..645 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:49 Download gff for MXO02351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 446..1079 11..645 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:49 Download gff for MXO02351.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29735440..29735655 11..227 98 <- Plus
3R 29735714..29735959 228..473 98 <- Plus
3R 29736016..29736187 474..645 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:10 Download gff for MXO02351.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25561162..25561377 11..227 98 <- Plus
arm_3R 25561436..25561681 228..473 98 <- Plus
arm_3R 25561738..25561909 474..645 98   Plus

MXO02351.5prime Sequence

353 bp (304 high quality bases) assembled on 2007-01-19

> MXO02351.5prime
CAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCAGCAGCGAC
TGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCGGTGGCACT
TCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCAGAAATTCC
GCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCAGTTCGGGC
CTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGCAGGGTTAT
TTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAAGGACCTCC
TCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTCCCCTGGAT
CTG

MXO02351.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-PA 981 CG7601-RA 1..345 9..353 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-RA 1250 CG7601-RA 95..439 9..353 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29736487..29736651 173..9 825 100 Minus
3R 32079331 3R 29736289..29736435 315..169 735 100 Minus
3R 32079331 3R 29736194..29736233 353..314 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:55:36 has no hits.

MXO02351.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:39 Download gff for MXO02351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-PA 1..345 9..353 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:58 Download gff for MXO02351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 95..439 9..353 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:02 Download gff for MXO02351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 95..439 9..353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:02 Download gff for MXO02351.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29736490..29736651 9..170 100   Minus
3R 29736194..29736232 315..353 100 <- Minus
3R 29736290..29736433 171..314 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:58 Download gff for MXO02351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25562212..25562373 9..170 100   Minus
arm_3R 25561916..25561954 315..353 100 <- Minus
arm_3R 25562012..25562155 171..314 100 <- Minus