MXO02352.3prime Sequence
612 bp (554 high quality bases) assembled on 2007-01-19
> MXO02352.3prime
ATGGTCTAGAAAGCTTGCTCCCAGAAATCCGAGGAAAGGATGCAAAAGTT
GTCCTAATATGCCTTTTACCGATGGCACTGTGCCGCCAACATCCAAGGTG
ATAGACCCCTGCAATCCGCGACCTAAAGGACCAAATTTCCCACCAAAGAT
TGGAATAATTTGACTAGGTGAACTAAATCCGAATAAGTTTCCTAGTGATC
CAAAGAAATTTCCGATTGGAGTAAAAATGCCAAAGGGGTCTAACGAAGGT
CCACTAAGAAATCCAGTTCCGAAAAGTCCATGTTGTCCGAAAATTCCCGT
ACCGAACAGTCCACCGTTTCCAAAGATTCCGCCAGCAACATTTAGCACAC
TATTTGGAACTACCGAACCGTCTAAATGACCAGGAAGGACCCCACCAGGG
AAAGGTCTTCCTGGACGGTTCGGCCGAGGACCACCTAGTATCCATGGAAA
TTGCCATGGTCCAAGTGGTCCGCCTGGTGAAGGTGGAGATCCACCAGGGA
AAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGATGGC
CCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACC
AGGTGAAAGGTT
MXO02352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2668-PA | 1134 | Peb-RA | 543..1131 | 607..19 | 2895 | 99.6 | Minus |
CG2668-PA | 1134 | Peb-RA | 528..645 | 607..490 | 415 | 94 | Minus |
CG2668-PA | 1134 | Peb-RA | 517..630 | 603..490 | 345 | 92.1 | Minus |
CG2668-PA | 1134 | Peb-RA | 502..615 | 603..490 | 345 | 92.1 | Minus |
CG2668-PA | 1134 | Peb-RA | 475..570 | 585..490 | 255 | 90.6 | Minus |
CG2668-PA | 1134 | Peb-RA | 487..538 | 603..552 | 210 | 96.1 | Minus |
CG2668-PA | 1134 | Peb-RA | 475..523 | 600..552 | 195 | 95.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peb-RB | 1529 | CG2668-RB | 566..1154 | 607..19 | 2915 | 99.7 | Minus |
Peb-RA | 1202 | CG2668-RA | 566..1154 | 607..19 | 2915 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25175501..25176089 | 19..607 | 2915 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:12 has no hits.
MXO02352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:39 Download gff for
MXO02352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2668-PA | 539..1134 | 18..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:11 Download gff for
MXO02352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peb-RA | 562..1154 | 19..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:01 Download gff for
MXO02352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peb-RA | 562..1154 | 19..612 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:01 Download gff for
MXO02352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25175501..25176093 | 19..612 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:11 Download gff for
MXO02352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21063024..21063616 | 19..612 | 99 | | Plus |
MXO02352.5prime Sequence
629 bp (621 high quality bases) assembled on 2007-01-19
> MXO02352.5prime
CAGTCGACATGGTGCGACAATTGATACTCGTCCTTTCTCTGATTCTCTTC
TGCGGCAGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAGAGCGAGTC
TGCCATCCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACGTTACTTAG
ATGTTCTCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAGACGGTGGA
AATTCAGCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCAAATATATT
GGCAAGAGGTGATATCGCCAGTTCCGGATATAGTAAAATTTCAGCTGGCG
TTGGCAAGGGAAGCGACCTAATCACTATTATTAAGAACACTCGATCCTAC
GATCCGTACCTTATTCCACCAGGTATTCCTGGCTATAATTATCCACTTGG
ATGGCCCCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCGACCACCAT
GGCTACCAATTAATTCTCCACCGATACGTCCAGGTGGACTTTTCCCTGGT
GGACCTTCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCTGGTGAACC
TTCACCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGGACCTTCCC
CTGGTGGGCCATCCCCTGTGACTCCGGCT
MXO02352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2668-PA | 1134 | Peb-RA | 1..610 | 9..618 | 3050 | 100 | Plus |
CG2668-PA | 1134 | Peb-RA | 490..625 | 483..618 | 430 | 92.6 | Plus |
CG2668-PA | 1134 | Peb-RA | 532..644 | 495..607 | 365 | 92.9 | Plus |
CG2668-PA | 1134 | Peb-RA | 505..640 | 483..618 | 330 | 89.7 | Plus |
CG2668-PA | 1134 | Peb-RA | 565..660 | 483..578 | 255 | 90.6 | Plus |
CG2668-PA | 1134 | Peb-RA | 607..659 | 555..607 | 240 | 98.1 | Plus |
CG2668-PA | 1134 | Peb-RA | 607..660 | 540..593 | 195 | 94.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peb-RB | 1529 | CG2668-RB | 24..633 | 9..618 | 3050 | 100 | Plus |
Peb-RA | 1202 | CG2668-RA | 24..633 | 9..618 | 3050 | 100 | Plus |
Peb-RB | 1529 | CG2668-RB | 570..682 | 495..607 | 460 | 93.8 | Plus |
Peb-RA | 1202 | CG2668-RA | 570..682 | 495..607 | 460 | 93.8 | Plus |
Peb-RB | 1529 | CG2668-RB | 555..678 | 495..618 | 455 | 91.1 | Plus |
Peb-RA | 1202 | CG2668-RA | 555..678 | 495..618 | 455 | 91.1 | Plus |
Peb-RB | 1529 | CG2668-RB | 573..683 | 483..593 | 420 | 91.9 | Plus |
Peb-RA | 1202 | CG2668-RA | 573..683 | 483..593 | 420 | 91.9 | Plus |
Peb-RB | 1529 | CG2668-RB | 588..683 | 483..578 | 345 | 90.6 | Plus |
Peb-RA | 1202 | CG2668-RA | 588..683 | 483..578 | 345 | 90.6 | Plus |
Peb-RB | 1529 | CG2668-RB | 603..683 | 483..563 | 270 | 88.9 | Plus |
Peb-RA | 1202 | CG2668-RA | 603..683 | 483..563 | 270 | 88.9 | Plus |
Peb-RB | 1529 | CG2668-RB | 629..692 | 494..557 | 230 | 90.6 | Plus |
Peb-RA | 1202 | CG2668-RA | 629..692 | 494..557 | 230 | 90.6 | Plus |
Peb-RB | 1529 | CG2668-RB | 633..692 | 483..542 | 210 | 90 | Plus |
Peb-RA | 1202 | CG2668-RA | 633..692 | 483..542 | 210 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25176022..25176617 | 618..23 | 2980 | 100 | Minus |
2R | 25286936 | 2R | 25175973..25176085 | 607..495 | 460 | 93.8 | Minus |
2R | 25286936 | 2R | 25175977..25176100 | 618..495 | 455 | 91.1 | Minus |
2R | 25286936 | 2R | 25175972..25176082 | 593..483 | 420 | 91.9 | Minus |
2R | 25286936 | 2R | 25175972..25176067 | 578..483 | 345 | 90.6 | Minus |
2R | 25286936 | 2R | 25175972..25176052 | 563..483 | 270 | 88.9 | Minus |
2R | 25286936 | 2R | 25175963..25176026 | 557..494 | 230 | 90.6 | Minus |
2R | 25286936 | 2R | 25175963..25176022 | 542..483 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:15 has no hits.
MXO02352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:39 Download gff for
MXO02352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2668-PA | 1..610 | 9..618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:25 Download gff for
MXO02352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peb-RA | 16..633 | 1..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:51 Download gff for
MXO02352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peb-RA | 16..633 | 1..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:51 Download gff for
MXO02352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25176022..25176616 | 24..618 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:25 Download gff for
MXO02352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21063545..21064139 | 24..618 | 100 | <- | Minus |