Clone MXO02352 Report

Search the DGRC for MXO02352

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:52
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPeb-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02352.3prime Sequence

612 bp (554 high quality bases) assembled on 2007-01-19

> MXO02352.3prime
ATGGTCTAGAAAGCTTGCTCCCAGAAATCCGAGGAAAGGATGCAAAAGTT
GTCCTAATATGCCTTTTACCGATGGCACTGTGCCGCCAACATCCAAGGTG
ATAGACCCCTGCAATCCGCGACCTAAAGGACCAAATTTCCCACCAAAGAT
TGGAATAATTTGACTAGGTGAACTAAATCCGAATAAGTTTCCTAGTGATC
CAAAGAAATTTCCGATTGGAGTAAAAATGCCAAAGGGGTCTAACGAAGGT
CCACTAAGAAATCCAGTTCCGAAAAGTCCATGTTGTCCGAAAATTCCCGT
ACCGAACAGTCCACCGTTTCCAAAGATTCCGCCAGCAACATTTAGCACAC
TATTTGGAACTACCGAACCGTCTAAATGACCAGGAAGGACCCCACCAGGG
AAAGGTCTTCCTGGACGGTTCGGCCGAGGACCACCTAGTATCCATGGAAA
TTGCCATGGTCCAAGTGGTCCGCCTGGTGAAGGTGGAGATCCACCAGGGA
AAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGATGGC
CCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACC
AGGTGAAAGGTT

MXO02352.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2668-PA 1134 Peb-RA 543..1131 607..19 2895 99.6 Minus
CG2668-PA 1134 Peb-RA 528..645 607..490 415 94 Minus
CG2668-PA 1134 Peb-RA 517..630 603..490 345 92.1 Minus
CG2668-PA 1134 Peb-RA 502..615 603..490 345 92.1 Minus
CG2668-PA 1134 Peb-RA 475..570 585..490 255 90.6 Minus
CG2668-PA 1134 Peb-RA 487..538 603..552 210 96.1 Minus
CG2668-PA 1134 Peb-RA 475..523 600..552 195 95.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 566..1154 607..19 2915 99.7 Minus
Peb-RA 1202 CG2668-RA 566..1154 607..19 2915 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175501..25176089 19..607 2915 99.7 Plus
Blast to na_te.dros performed on 2014-11-28 22:21:12 has no hits.

MXO02352.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:39 Download gff for MXO02352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2668-PA 539..1134 18..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:11 Download gff for MXO02352.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 562..1154 19..612 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:01 Download gff for MXO02352.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 562..1154 19..612 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:01 Download gff for MXO02352.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25175501..25176093 19..612 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:11 Download gff for MXO02352.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063024..21063616 19..612 99   Plus

MXO02352.5prime Sequence

629 bp (621 high quality bases) assembled on 2007-01-19

> MXO02352.5prime
CAGTCGACATGGTGCGACAATTGATACTCGTCCTTTCTCTGATTCTCTTC
TGCGGCAGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAGAGCGAGTC
TGCCATCCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACGTTACTTAG
ATGTTCTCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAGACGGTGGA
AATTCAGCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCAAATATATT
GGCAAGAGGTGATATCGCCAGTTCCGGATATAGTAAAATTTCAGCTGGCG
TTGGCAAGGGAAGCGACCTAATCACTATTATTAAGAACACTCGATCCTAC
GATCCGTACCTTATTCCACCAGGTATTCCTGGCTATAATTATCCACTTGG
ATGGCCCCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCGACCACCAT
GGCTACCAATTAATTCTCCACCGATACGTCCAGGTGGACTTTTCCCTGGT
GGACCTTCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCTGGTGAACC
TTCACCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGGACCTTCCC
CTGGTGGGCCATCCCCTGTGACTCCGGCT

MXO02352.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2668-PA 1134 Peb-RA 1..610 9..618 3050 100 Plus
CG2668-PA 1134 Peb-RA 490..625 483..618 430 92.6 Plus
CG2668-PA 1134 Peb-RA 532..644 495..607 365 92.9 Plus
CG2668-PA 1134 Peb-RA 505..640 483..618 330 89.7 Plus
CG2668-PA 1134 Peb-RA 565..660 483..578 255 90.6 Plus
CG2668-PA 1134 Peb-RA 607..659 555..607 240 98.1 Plus
CG2668-PA 1134 Peb-RA 607..660 540..593 195 94.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 24..633 9..618 3050 100 Plus
Peb-RA 1202 CG2668-RA 24..633 9..618 3050 100 Plus
Peb-RB 1529 CG2668-RB 570..682 495..607 460 93.8 Plus
Peb-RA 1202 CG2668-RA 570..682 495..607 460 93.8 Plus
Peb-RB 1529 CG2668-RB 555..678 495..618 455 91.1 Plus
Peb-RA 1202 CG2668-RA 555..678 495..618 455 91.1 Plus
Peb-RB 1529 CG2668-RB 573..683 483..593 420 91.9 Plus
Peb-RA 1202 CG2668-RA 573..683 483..593 420 91.9 Plus
Peb-RB 1529 CG2668-RB 588..683 483..578 345 90.6 Plus
Peb-RA 1202 CG2668-RA 588..683 483..578 345 90.6 Plus
Peb-RB 1529 CG2668-RB 603..683 483..563 270 88.9 Plus
Peb-RA 1202 CG2668-RA 603..683 483..563 270 88.9 Plus
Peb-RB 1529 CG2668-RB 629..692 494..557 230 90.6 Plus
Peb-RA 1202 CG2668-RA 629..692 494..557 230 90.6 Plus
Peb-RB 1529 CG2668-RB 633..692 483..542 210 90 Plus
Peb-RA 1202 CG2668-RA 633..692 483..542 210 90 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25176022..25176617 618..23 2980 100 Minus
2R 25286936 2R 25175973..25176085 607..495 460 93.8 Minus
2R 25286936 2R 25175977..25176100 618..495 455 91.1 Minus
2R 25286936 2R 25175972..25176082 593..483 420 91.9 Minus
2R 25286936 2R 25175972..25176067 578..483 345 90.6 Minus
2R 25286936 2R 25175972..25176052 563..483 270 88.9 Minus
2R 25286936 2R 25175963..25176026 557..494 230 90.6 Minus
2R 25286936 2R 25175963..25176022 542..483 210 90 Minus
Blast to na_te.dros performed on 2014-11-28 20:32:15 has no hits.

MXO02352.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:39 Download gff for MXO02352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2668-PA 1..610 9..618 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:25 Download gff for MXO02352.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..633 1..618 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:51 Download gff for MXO02352.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..633 1..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:51 Download gff for MXO02352.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25176022..25176616 24..618 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:25 Download gff for MXO02352.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063545..21064139 24..618 100 <- Minus