MXO02353.3prime Sequence
732 bp (661 high quality bases) assembled on 2007-01-19
> MXO02353.3prime
ATGGTCTAGAAAGCTTGCTATCGCAGTTTTCACGGATTTTACACTGGATT
GCGATACAGTACCATCCTCCACCTCAAGATCCTGCAGCATGGCAATCATC
TCCTCGTCCGTAATCACAACCTCCGCCCTTAGGTTGTTATTAATATGTGG
ACTAAACGTAGCCGGCGCAGATTCTCCAGCCAGTTCACGCAATTCCTGCT
CAAGTTGATCATCTTCCTGGCTCGCGTTCTCCACAACGCTATTGGACATT
ATGTCCTGAACTTCCCGATGCTGGTCGAGCGTGTCCCGCACATCGGCCAA
TACTTCGTCGACATTGTCGTACTTCAATCCAGAATTCGAGAGAACCTTCT
TCAAGGTATTTGATCCGATCTTGTAGGCATCCAGAACAACGCCACTGTTC
TGGGCCTCATCCACACTGGACAGAAGAGATTCGATGTTGTGCAGGGCAAG
ACTGCGACGTTCATGATTCTTTTCCAGGAGATGCCTTTTTCGTAGATAGG
TTTTTGCCATTTGCCGTTTGTTCTCCTTCATGTACTGGCGCACTTTGTCA
TCGTTCACCTTGATCTCCTCCTCTAGGTCCTCCAACTGCTTGAGTAACTG
AGCTTGGGTATTCTGAAGATTGTGGACGGCCTGGTCTTCTTGGCTTATAT
TAAGATCGTCGCCAGGTTTTTTTGGTATTTTGATCAAGTGAATTTGGCGT
ATGCCTTTTTCTACTTTAAATTCTTAGGCCCA
MXO02353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-PB | 1347 | CG5498-RB | 639..1344 | 724..19 | 3530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-RB | 1523 | CG5498-RB | 718..1430 | 732..19 | 3545 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20382498..20382941 | 19..462 | 2220 | 100 | Plus |
3L | 28110227 | 3L | 20383010..20383219 | 462..671 | 1050 | 100 | Plus |
3L | 28110227 | 3L | 20383281..20383333 | 672..724 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:37 has no hits.
MXO02353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:40 Download gff for
MXO02353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-PB | 633..1347 | 15..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:41 Download gff for
MXO02353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 719..1438 | 11..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:24 Download gff for
MXO02353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 719..1438 | 11..731 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:24 Download gff for
MXO02353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20382490..20382940 | 11..461 | 99 | <- | Plus |
3L | 20383010..20383219 | 462..671 | 100 | <- | Plus |
3L | 20383281..20383339 | 672..731 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:41 Download gff for
MXO02353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20375590..20376040 | 11..461 | 99 | <- | Plus |
arm_3L | 20376110..20376319 | 462..671 | 100 | <- | Plus |
arm_3L | 20376381..20376439 | 672..731 | 98 | | Plus |
MXO02353.5prime Sequence
796 bp (789 high quality bases) assembled on 2007-01-19
> MXO02353.5prime
CAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAACCGACCAC
TTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAGGTGCAGTT
CGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGACGCAAAAA
TGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCAGCGGACGA
CCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGGGGTGACCA
ACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCAGAGGAAGC
AGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATTCCTGGGGT
GGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGGAGCTGGTC
GAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTCCGCTTTAA
TTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATCTCATCGCC
GAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTTAATGCTTT
GAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGACAAAGATC
TATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGGGCCTAGAA
TTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAAATACCAAA
AAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGCCGTCCACA
ATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGGACCT
MXO02353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-PB | 1347 | CG5498-RB | 1..788 | 9..796 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-RB | 1523 | CG5498-RB | 87..874 | 9..796 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20383553..20384023 | 479..9 | 2355 | 100 | Minus |
3L | 28110227 | 3L | 20383281..20383500 | 699..480 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 20383123..20383219 | 796..700 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:25 has no hits.
MXO02353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:40 Download gff for
MXO02353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-PB | 1..788 | 9..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:58 Download gff for
MXO02353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 87..874 | 9..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:30 Download gff for
MXO02353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 87..874 | 9..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:30 Download gff for
MXO02353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20383123..20383219 | 700..796 | 100 | <- | Minus |
3L | 20383281..20383500 | 480..699 | 100 | <- | Minus |
3L | 20383553..20384023 | 9..479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:58 Download gff for
MXO02353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20376223..20376319 | 700..796 | 100 | <- | Minus |
arm_3L | 20376381..20376600 | 480..699 | 100 | <- | Minus |
arm_3L | 20376653..20377123 | 9..479 | 100 | | Minus |