Clone MXO02353 Report

Search the DGRC for MXO02353

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:53
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5498-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02353.3prime Sequence

732 bp (661 high quality bases) assembled on 2007-01-19

> MXO02353.3prime
ATGGTCTAGAAAGCTTGCTATCGCAGTTTTCACGGATTTTACACTGGATT
GCGATACAGTACCATCCTCCACCTCAAGATCCTGCAGCATGGCAATCATC
TCCTCGTCCGTAATCACAACCTCCGCCCTTAGGTTGTTATTAATATGTGG
ACTAAACGTAGCCGGCGCAGATTCTCCAGCCAGTTCACGCAATTCCTGCT
CAAGTTGATCATCTTCCTGGCTCGCGTTCTCCACAACGCTATTGGACATT
ATGTCCTGAACTTCCCGATGCTGGTCGAGCGTGTCCCGCACATCGGCCAA
TACTTCGTCGACATTGTCGTACTTCAATCCAGAATTCGAGAGAACCTTCT
TCAAGGTATTTGATCCGATCTTGTAGGCATCCAGAACAACGCCACTGTTC
TGGGCCTCATCCACACTGGACAGAAGAGATTCGATGTTGTGCAGGGCAAG
ACTGCGACGTTCATGATTCTTTTCCAGGAGATGCCTTTTTCGTAGATAGG
TTTTTGCCATTTGCCGTTTGTTCTCCTTCATGTACTGGCGCACTTTGTCA
TCGTTCACCTTGATCTCCTCCTCTAGGTCCTCCAACTGCTTGAGTAACTG
AGCTTGGGTATTCTGAAGATTGTGGACGGCCTGGTCTTCTTGGCTTATAT
TAAGATCGTCGCCAGGTTTTTTTGGTATTTTGATCAAGTGAATTTGGCGT
ATGCCTTTTTCTACTTTAAATTCTTAGGCCCA

MXO02353.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 1347 CG5498-RB 639..1344 724..19 3530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 718..1430 732..19 3545 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20382498..20382941 19..462 2220 100 Plus
3L 28110227 3L 20383010..20383219 462..671 1050 100 Plus
3L 28110227 3L 20383281..20383333 672..724 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:46:37 has no hits.

MXO02353.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:40 Download gff for MXO02353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 633..1347 15..731 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:41 Download gff for MXO02353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 719..1438 11..731 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:24 Download gff for MXO02353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 719..1438 11..731 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:24 Download gff for MXO02353.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20382490..20382940 11..461 99 <- Plus
3L 20383010..20383219 462..671 100 <- Plus
3L 20383281..20383339 672..731 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:41 Download gff for MXO02353.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20375590..20376040 11..461 99 <- Plus
arm_3L 20376110..20376319 462..671 100 <- Plus
arm_3L 20376381..20376439 672..731 98   Plus

MXO02353.5prime Sequence

796 bp (789 high quality bases) assembled on 2007-01-19

> MXO02353.5prime
CAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAACCGACCAC
TTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAGGTGCAGTT
CGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGACGCAAAAA
TGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCAGCGGACGA
CCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGGGGTGACCA
ACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCAGAGGAAGC
AGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATTCCTGGGGT
GGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGGAGCTGGTC
GAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTCCGCTTTAA
TTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATCTCATCGCC
GAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTTAATGCTTT
GAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGACAAAGATC
TATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGGGCCTAGAA
TTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAAATACCAAA
AAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGCCGTCCACA
ATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGGACCT

MXO02353.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 1347 CG5498-RB 1..788 9..796 3940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 87..874 9..796 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20383553..20384023 479..9 2355 100 Minus
3L 28110227 3L 20383281..20383500 699..480 1100 100 Minus
3L 28110227 3L 20383123..20383219 796..700 485 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:06:25 has no hits.

MXO02353.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:40 Download gff for MXO02353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 1..788 9..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:58 Download gff for MXO02353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..874 9..796 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:30 Download gff for MXO02353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..874 9..796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:30 Download gff for MXO02353.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20383123..20383219 700..796 100 <- Minus
3L 20383281..20383500 480..699 100 <- Minus
3L 20383553..20384023 9..479 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:58 Download gff for MXO02353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20376223..20376319 700..796 100 <- Minus
arm_3L 20376381..20376600 480..699 100 <- Minus
arm_3L 20376653..20377123 9..479 100   Minus