Clone MXO02354 Report

Search the DGRC for MXO02354

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:54
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9631-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02354.3prime Sequence

874 bp (751 high quality bases) assembled on 2007-01-19

> MXO02354.3prime
ATGGTCTAGAAAGCTTGCCATGACCATATTTTGACGTACCCAGTCAATGT
GCCGTGCAACATCGCAATAGATAACATACTTGCTAAGGTCGCAAATCTCT
CCGTGGCGAGGCGATAAAGAGACCACACCACGAACGTACCATCGATTGTT
ACGCAGGACGATCAGAGCAGATCCCGAGTCTCCGAAGCAGGGACCATGTG
ATTCTGAATTGCCGGCACAGACGGTCCGCCGCGTGATGAAGTCCTCCGCC
CGCTTCATCTCCTTGAGACACTGATCCCGGGGCACCAATCGAACACTCAC
TGTCTTGGGAAACCGCGTCTTCTGGGCACTCCTGTCGTAGCCCCAACCGG
CTACTGCTCCAGTATCGCCCTCATTCGGTGGCAATCCCATATTGGAGCCC
CAAAGGCAGAGGGGTCGAATGTACTTGGTGTACACCATCGGAGAGGTCAG
CACCAGCAGACCAACGTCCGCATCCGGAACTGGATTGCCCTCGTAGGCGG
ACGGAGTCAGCACGCTGGTCACGCTAACCAGGGAGGCTCCATTCTCAGGA
TTCTCGTTGCGATCATGCCTGCCCAAATAGACCCAAAGCTGGCTGGCGCT
CTTTCCATAAATGCAGTGAGCTGCCGTGATCACAGTCCGTTTGGAGATAA
CCGACACCACGCATTTGTATGTAGCCGTGCCAACACCTTCGTAAAGGGCC
GCGAGCCAGGGGTACTGACCGCGGGTCACCAGGTCGCCTCCGATTTGAAG
AGGCGAAAAGCCCTCAACGCCGCATTCCTCAAAGTCCGAATCTATTCTGG
GCATGATTGAAAGAAGGAAAGGATTGGGGTCATTGCTCGGTGTGCTCGGC
GGCGGACGGCCCTGACGCCCTATT

MXO02354.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9631-PA 1320 CG9631-RA 462..1317 874..19 4180 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9631-RA 1449 CG9631-RA 508..1363 874..19 4220 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14225184..14226039 19..874 4220 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 22:21:19 has no hits.

MXO02354.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:40 Download gff for MXO02354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9631-PA 462..1320 16..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:13 Download gff for MXO02354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9631-RA 505..1366 13..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:03 Download gff for MXO02354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9631-RA 508..1369 13..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:03 Download gff for MXO02354.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14225178..14226039 13..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:13 Download gff for MXO02354.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10050900..10051761 13..874 99   Plus

MXO02354.5prime Sequence

771 bp (651 high quality bases) assembled on 2007-01-19

> MXO02354.5prime
CAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTTGTCTCAAT
CTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGTGAGAGGTA
TTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGTCTTCACGG
CGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTTTCACTGCT
CACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCGTATCCCAA
TAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGGCGAGGTGT
TTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTGTCCGGGCG
GAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGATGCCCCTTC
AAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCCAATTAGTC
AAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGCCGCCGAGC
ACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATGCCCAGAAT
AGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCCTCTTCAAA
TCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCGCGGCCCTT
TACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCGGTTATCTC
CAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAAGAGCGCCA
GCCAGCTTTGGGTCTATTTGG

MXO02354.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9631-PA 1320 CG9631-RA 1..763 9..771 3815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9631-RA 1449 CG9631-RA 47..809 9..771 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14225738..14226121 771..388 1920 100 Minus
3R 32079331 3R 14226505..14226716 220..9 1045 99.5 Minus
3R 32079331 3R 14226261..14226438 391..214 875 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 22:27:31 has no hits.

MXO02354.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:41 Download gff for MXO02354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9631-PA 1..763 9..771 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:38 Download gff for MXO02354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9631-RA 36..806 1..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:40 Download gff for MXO02354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9631-RA 39..809 1..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:40 Download gff for MXO02354.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14225738..14226121 388..771 100 <- Minus
3R 14226265..14226436 216..387 100 <- Minus
3R 14226510..14226723 1..215 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:38 Download gff for MXO02354.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10051460..10051843 388..771 100 <- Minus
arm_3R 10051987..10052158 216..387 100 <- Minus
arm_3R 10052232..10052445 1..215 98   Minus