MXO02354.3prime Sequence
874 bp (751 high quality bases) assembled on 2007-01-19
> MXO02354.3prime
ATGGTCTAGAAAGCTTGCCATGACCATATTTTGACGTACCCAGTCAATGT
GCCGTGCAACATCGCAATAGATAACATACTTGCTAAGGTCGCAAATCTCT
CCGTGGCGAGGCGATAAAGAGACCACACCACGAACGTACCATCGATTGTT
ACGCAGGACGATCAGAGCAGATCCCGAGTCTCCGAAGCAGGGACCATGTG
ATTCTGAATTGCCGGCACAGACGGTCCGCCGCGTGATGAAGTCCTCCGCC
CGCTTCATCTCCTTGAGACACTGATCCCGGGGCACCAATCGAACACTCAC
TGTCTTGGGAAACCGCGTCTTCTGGGCACTCCTGTCGTAGCCCCAACCGG
CTACTGCTCCAGTATCGCCCTCATTCGGTGGCAATCCCATATTGGAGCCC
CAAAGGCAGAGGGGTCGAATGTACTTGGTGTACACCATCGGAGAGGTCAG
CACCAGCAGACCAACGTCCGCATCCGGAACTGGATTGCCCTCGTAGGCGG
ACGGAGTCAGCACGCTGGTCACGCTAACCAGGGAGGCTCCATTCTCAGGA
TTCTCGTTGCGATCATGCCTGCCCAAATAGACCCAAAGCTGGCTGGCGCT
CTTTCCATAAATGCAGTGAGCTGCCGTGATCACAGTCCGTTTGGAGATAA
CCGACACCACGCATTTGTATGTAGCCGTGCCAACACCTTCGTAAAGGGCC
GCGAGCCAGGGGTACTGACCGCGGGTCACCAGGTCGCCTCCGATTTGAAG
AGGCGAAAAGCCCTCAACGCCGCATTCCTCAAAGTCCGAATCTATTCTGG
GCATGATTGAAAGAAGGAAAGGATTGGGGTCATTGCTCGGTGTGCTCGGC
GGCGGACGGCCCTGACGCCCTATT
MXO02354.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9631-PA | 1320 | CG9631-RA | 462..1317 | 874..19 | 4180 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9631-RA | 1449 | CG9631-RA | 508..1363 | 874..19 | 4220 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14225184..14226039 | 19..874 | 4220 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:19 has no hits.
MXO02354.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:40 Download gff for
MXO02354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9631-PA | 462..1320 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:13 Download gff for
MXO02354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9631-RA | 505..1366 | 13..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:03 Download gff for
MXO02354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9631-RA | 508..1369 | 13..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:03 Download gff for
MXO02354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14225178..14226039 | 13..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:13 Download gff for
MXO02354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10050900..10051761 | 13..874 | 99 | | Plus |
MXO02354.5prime Sequence
771 bp (651 high quality bases) assembled on 2007-01-19
> MXO02354.5prime
CAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTTGTCTCAAT
CTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGTGAGAGGTA
TTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGTCTTCACGG
CGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTTTCACTGCT
CACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCGTATCCCAA
TAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGGCGAGGTGT
TTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTGTCCGGGCG
GAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGATGCCCCTTC
AAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCCAATTAGTC
AAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGCCGCCGAGC
ACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATGCCCAGAAT
AGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCCTCTTCAAA
TCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCGCGGCCCTT
TACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCGGTTATCTC
CAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAAGAGCGCCA
GCCAGCTTTGGGTCTATTTGG
MXO02354.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9631-PA | 1320 | CG9631-RA | 1..763 | 9..771 | 3815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9631-RA | 1449 | CG9631-RA | 47..809 | 9..771 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14225738..14226121 | 771..388 | 1920 | 100 | Minus |
3R | 32079331 | 3R | 14226505..14226716 | 220..9 | 1045 | 99.5 | Minus |
3R | 32079331 | 3R | 14226261..14226438 | 391..214 | 875 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:31 has no hits.
MXO02354.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:41 Download gff for
MXO02354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9631-PA | 1..763 | 9..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:38 Download gff for
MXO02354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9631-RA | 36..806 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:40 Download gff for
MXO02354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9631-RA | 39..809 | 1..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:40 Download gff for
MXO02354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14225738..14226121 | 388..771 | 100 | <- | Minus |
3R | 14226265..14226436 | 216..387 | 100 | <- | Minus |
3R | 14226510..14226723 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:38 Download gff for
MXO02354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10051460..10051843 | 388..771 | 100 | <- | Minus |
arm_3R | 10051987..10052158 | 216..387 | 100 | <- | Minus |
arm_3R | 10052232..10052445 | 1..215 | 98 | | Minus |