Clone MXO02355 Report

Search the DGRC for MXO02355

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:55
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG18659-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02355.3prime Sequence

796 bp (669 high quality bases) assembled on 2007-01-19

> MXO02355.3prime
ATGGTCTAGAAAGCTTGCATCGAATGTTGTCCAGTTGTTCATGCCCTTTC
CGGTGGTGAGCTGCTGCGACTTCTCCGTTCCGTTGGCGTTCAGGGTGAAC
TGGTCCAGGCCGTACTTGCGGAGCAGCTCGAAGTCGTCGTCGGGCTTGGC
GGCAATGGTGTTGCGCTGGATCTGCGGCGGTGGGTGCATCGGTGGCGTCC
GTCCCGTCACAGCTGCCACCGTGGCCATGTGCTTGGGCGCGAAATACGGG
TACAGTGGATTGCTGACGCTACTGGCCACCACACTGCTGTTGACGCCAGC
GGGCAGTGTGCTGCACTTCTTGGCAAATGCCGTGCTGAGCGGCGGCAACG
GACGAGCATTCTGATTGAGCGGATCGAAGTCCTCCAGGTCGAAGCTGGTG
TTGTTGCTATCGTCCAGCGATATCAGATCATTCATGCTGTCCTCCAGTGG
CTGCTGTTGCTCTCTCTTGGCCCGCGGTGTCGGAATGGGCGGATCAGACA
CATTAAGATGCGAGAACGTCGACGCCGCCGTCACAAACGATGCGCCCGAG
GAGGATGAGGTCGCCGATGACGAGGATGCATTCGAGCTGCGTACAGAATC
ATTTCCGGGCTCGTCCTTCCAGCAGTTACGTTCCAGTTTGCTAATCTCTG
CACTGACGGCTGCAGCCGTGGCCGCCACAATCGCATTCGAGCTGCCCTGC
CTCCGGGGCGGAATCGGTGGAGATTGTACGTCCGGCGGACTATCAAAGCT
GCTGGAATCGGCGGTAGGCAGGGGCTGACGCGGTCTGGTGGGCGTG

MXO02355.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18659-PA 2727 CG18659-RA 1947..2724 796..19 3890 100 Minus
CG18659-PB 1500 CG18659-RB 720..1497 796..19 3890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18659-RH 3759 CG18659-RH 2581..3358 796..19 3890 100 Minus
CG18659-RF 3816 CG18659-RF 2638..3415 796..19 3890 100 Minus
CG18659-RE 3655 CG18659-RE 2477..3254 796..19 3890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9123705..9124147 19..461 2215 100 Plus
2R 25286936 2R 9124734..9125080 450..796 1690 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 19:46:59 has no hits.

MXO02355.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:41 Download gff for MXO02355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18659-PB 720..1500 16..796 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:04 Download gff for MXO02355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18659-RE 2477..3259 14..796 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:52 Download gff for MXO02355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18659-RE 2477..3259 14..796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:52 Download gff for MXO02355.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9124744..9125080 460..796 100   Plus
2R 9123700..9124145 14..459 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:04 Download gff for MXO02355.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5011205..5011650 14..459 99 <- Plus
arm_2R 5012249..5012585 460..796 100   Plus

MXO02355.5prime Sequence

700 bp (698 high quality bases) assembled on 2007-01-19

> MXO02355.5prime
CAGTCGACATGTTCATTCCCACACACCTTATTTGCAATACTAATCCGGCT
GTAAAGTCTGCCGTCAAATCGGTTAAGGAGGGCTCGCGGGGCATGAAGAC
CGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAACCAGTTTG
GTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATTCGGATCGT
CCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCCATCGGGGC
TGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCGTCTTGATG
GAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCGGCGCCAGG
GAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCCATGTCTAG
CTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGCGAGTGCTG
GTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTAGCTCGGCG
AGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAACTGCAGAA
CCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCCTTAAGCCAAACG
CAGAGCACAGGCGAGGAGCAGCACCGCCAGCCCGTCCACCGCCACCGCAA
TCTACGCCCGCCTCCTACTACAATCATCCCTATGCCGCGCATCCGCACGT

MXO02355.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18659-PB 1500 CG18659-RB 1..692 9..700 3460 100 Plus
CG18659-PA 2727 CG18659-RA 1258..1919 39..700 3310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18659-RE 3655 CG18659-RE 1758..2449 9..700 3460 100 Plus
CG18659-RI 3513 CG18659-RI 1648..2313 35..700 3315 99.8 Plus
CG18659-RA 3519 CG18659-RA 1648..2313 35..700 3315 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9125551..9126067 587..71 2585 100 Minus
2R 25286936 2R 9125108..9125220 700..588 565 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:46:00 has no hits.

MXO02355.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:42 Download gff for MXO02355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18659-PB 1..692 9..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:52 Download gff for MXO02355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18659-RE 1750..2449 1..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:34 Download gff for MXO02355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18659-RE 1750..2449 1..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:34 Download gff for MXO02355.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9126181..9126213 39..71 100 <- Minus
2R 9127027..9127062 1..38 92   Minus
2R 9125108..9125220 588..700 100 <- Minus
2R 9125551..9126066 72..587 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:52 Download gff for MXO02355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5012613..5012725 588..700 100 <- Minus
arm_2R 5013056..5013571 72..587 100 <- Minus
arm_2R 5013686..5013718 39..71 100 <- Minus
arm_2R 5014532..5014567 1..38 92   Minus