MXO02356.3prime Sequence
792 bp (738 high quality bases) assembled on 2007-01-19
> MXO02356.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGAAAAAAAGTTCATAATGCCAGCTT
GTTTGGTTTTCGGCGCATCCTTTCCAGCTTTCGCGGCTGAAGGCGGTGAC
TTCTTTTTGTTGACGGGAGCAGCAGCCTTTGGGGAAACCTTTTTGTTGGC
AGGCTGGGCTTTTGTTGGTTTACGCTGCGTAATGACGAAGCCATCTTCAT
CCAGATAGGTTTCATTGGCCGGTTCCGTATCCATTTTCTCATCCAATGCG
ATGGTCTCTTCATCGGCGGACTTCTTGGGCGGCTGCTCCTCGTCCTCAGA
GTCGCTGATTCGTCGCCGCTTGGAGGACGAGGCCTTTTCCTGATCGGAGT
CGTTGTCCGACTCGATCACCTTCCGCCGCAGCATGTCCAGCTTTTCCTCC
TCGTCGGACGATTCGGCACTCTCCTCGTCGAACAGTTGCATGGAAGTGTT
TGCCGTTGTTGGCTTTTTGGTGGGACTGGGGGATTTCTTTTTCGAGGCTT
CCTTTTTGTTTGAATTGGAAGCATCTTTCTTCGATTTATCTTCGGATTCC
GGTGGCGACTTCTTGGCGCCTGCCGGTTGCTTCTTAAAGAAGTTGTCCAC
GGTGCCGGACGTCGATTTGCTGGGCGTGGCTTTGACATCCTTTGGCTTGC
TGGCCGCCGCTGTGAAGAAGCTATTAATGCTACCCTTTTTGGCTGCTGCA
GGCTTGGCTTTAGAGGCCTGTTCCTTGGGCGAGGTCTTCTTATCCTCCGG
AGAGGACTTGCTGGCCACTGGCTTTTTCCGCCTTCCACTTTG
MXO02356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3975-PA | 1296 | CG3975-RA | 521..1293 | 792..19 | 3805 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 562..1334 | 792..19 | 3830 | 99.7 | Minus |
| Pol32-RB | 1486 | CG3975-RB | 562..1334 | 792..19 | 3830 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15254971..15255743 | 19..792 | 3805 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:17 has no hits.
MXO02356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:42 Download gff for
MXO02356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 521..1296 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:52 Download gff for
MXO02356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 562..1337 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:36 Download gff for
MXO02356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 562..1337 | 15..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:36 Download gff for
MXO02356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15254967..15255743 | 15..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:52 Download gff for
MXO02356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15254967..15255743 | 15..792 | 99 | | Plus |
MXO02356.5prime Sequence
893 bp (711 high quality bases) assembled on 2007-01-19
> MXO02356.5prime
CAGTCGACATGTCGCTTAAAAAGGCTCTCGACGATTGCATGATCGATTTC
GATCGCTGTGTGCTGGTCACCGATCTTCTGGAGGAGTACAAACTGTCCTA
CAAGGAGGTGAACGATGTGCTGGAGGCCTACATCAAAGAGCAGGAACCTG
CCACAAAATTCGAGAAGAGATTTCTAGTCCATGGCAAGCGTAAAACGCAA
GGATCCGATTCCGGCGAAGATCTGTACTCTGTGGTGCTGGAGAGCAGGAT
GCAGGATTGGCTGGCCAAAGTCCAGGATGCGGAGTCTCAGCTGTATAGTG
TGAAAATAGCCGGTGGCACCAAAGCGCCGGCTGCGATTTTCAAGCCCATG
CAGCATTTGGAGGTGAAGTTGGCAAAAGTGGAGCAGCGTCCTGGAGCGGG
AAAGATAGTGCCCAGTGCAAATGGGACGACTCCCCACAATGGAGTCAAAT
CTGAACCCACTAAATCGGAGCCATCAAAGTCTGCGGTTAAGTTGGAGCCT
TCAAAATCTTCACTTAAATCAGAGCCAGCAAAGTCGAAGGCGGAAAAGCC
AGTGGCCAGCAAGTCCTCTCCGGAGGATAAGAAGACCTCGCCCAAGGAAC
AGGCCTCTAAAGCCAAGCCTGCAGCAGCCAAAAAGGGTAGCATTAATAGC
TTCTTCACAGCGGCGGCCAGCAAGCCAAAGGATGTCAAAGCCACGCCCAG
CAAATCGACGTCCGGCCCCGTGGACAACTTCTTTAAGAAGCAACCGGCAG
GCGCCAAGAAGTCGCCACCGGAATCCGAAATAAATCGAAGAAAGATGCCT
CAATTCAAACAAAAAGGAAGCCTCGAAAAAAAAATCCCCCATTCCCACCA
AAAGCCCACAACGGCAAACACTTCCATGCAACTGTCCGACGAG
MXO02356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3975-PA | 1296 | CG3975-RA | 1..888 | 9..893 | 4170 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 36..929 | 3..893 | 4290 | 98.9 | Plus |
| Pol32-RB | 1486 | CG3975-RB | 36..929 | 3..893 | 4290 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15255376..15256269 | 893..3 | 4215 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:48 has no hits.
MXO02356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:43 Download gff for
MXO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 1..888 | 9..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:39 Download gff for
MXO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 34..929 | 1..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:18 Download gff for
MXO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 34..929 | 1..893 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:18 Download gff for
MXO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15255376..15256269 | 1..893 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:39 Download gff for
MXO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15255376..15256269 | 1..893 | 98 | | Minus |
