Clone MXO02357 Report

Search the DGRC for MXO02357

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:57
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptwal-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02357.3prime Sequence

740 bp (733 high quality bases) assembled on 2007-01-19

> MXO02357.3prime
CTTAAAGCGCCCGCCAAACGAAGGGNCNAGAAAGCTTGCCACCTTTCAAG
TTAGTTCGGGCACGGCCTTGAAAAGATCTGCCACGATGCCAATATCGGCG
ACCTGGAAGATGGGCGCTCCGGGATCCTTGTTGATGGCCACAATCGTCTT
GGAGTCCTTCATGCCAGCCAAGTGCTGGATGGCGCCTGAGATTCCGACAG
CGATGTACAGCTCGGGAGCCACAATCTTGCCGGTCTGACCGATCTGCAGA
TCATTGGGCACAAATCCAGCATCTTCGGCAGCACGAGAGGCACCCACAGC
GGCACCAAACTTATCGGCCAGATCATACAGCAGCTTGAAGTTATCTTTTT
TTTTCAGGCCCCGCCCCCCGGACACAATAACCGGGGCTCCGGCCAGCTCG
TTTCTTTCCCCCCCCCCCCAGNNNNNGGGANANNAATAAAAAAAGAAGGG
GGGNGAAGNNANNAGNNGGNGNNGGNNNNANGGNNNNANNNNNANNGNNG
GNGGNNGNNGGNGGGAAANNGGNGNNNNNNANGGNGANNANNNNAANGGN
GNNNNGGGANNNNAGGGNGAGGANAGNANNNNNGGNGNAGAAAGNGNGNA
NAAAGGGGNNGNNNGAANNAANANNGANGAANNNNGAAAAGGGNGAAANA
NNNAGNNGGGNNGNNANGGGGGGAAGNANGNANNGGNNGAAAGNAGAAGN
AAAGGGNAGGAGGGGGGGGAANNNGAANGGAGAAGGGGGG

MXO02357.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8996-PA 993 wal-RA 684..980 346..50 1410 98.9 Minus
CG8996-PB 993 wal-RB 684..980 346..50 1410 98.9 Minus
CG8996-PA 993 wal-RA 630..677 400..353 140 91.6 Minus
CG8996-PB 993 wal-RB 630..677 400..353 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 706..1063 400..43 1565 95.8 Minus
wal-RA 1212 CG8996-RA 706..1063 400..43 1565 95.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689085..11689442 43..400 1565 95.8 Plus
Blast to na_te.dros performed on 2014-11-28 20:32:22 has no hits.

MXO02357.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:43 Download gff for MXO02357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8996-PB 630..993 36..400 95   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:27 Download gff for MXO02357.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 706..1070 35..400 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:54 Download gff for MXO02357.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 706..1070 35..400 95   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:54 Download gff for MXO02357.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11689078..11689438 35..396 95 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:27 Download gff for MXO02357.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576583..7576943 35..396 95 <- Plus

MXO02357.5prime Sequence

769 bp (730 high quality bases) assembled on 2007-01-19

> MXO02357.5prime
CAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCAGCAGCATT
TTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAACAATGAGGT
ACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAAGATCGGTG
GTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCGCTTCCGAG
GCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCCGAAAATGC
CGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGTCCTGGCCG
CCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTTCGGCTTTC
GGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTGTCGCCCAT
TTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCGCACTATCT
ACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCGTTAAGGTG
ATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGCGGTGGAAG
TGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAGCCTGTCCG
AATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGCTGGCCGGA
GCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGAGATAACTT
CAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGTGGGTGCCT
CTCGTGCTGCCGTGGATGC

MXO02357.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8996-PA 993 wal-RA 1..761 9..769 3805 100 Plus
CG8996-PB 993 wal-RB 1..761 9..769 3805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 77..837 9..769 3805 100 Plus
wal-RA 1212 CG8996-RA 77..837 9..769 3805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689311..11689888 769..192 2890 100 Minus
2R 25286936 2R 11690445..11690586 192..51 710 100 Minus
2R 25286936 2R 11690678..11690719 50..9 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:26:28 has no hits.

MXO02357.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:43 Download gff for MXO02357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8996-PB 1..761 9..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:52 Download gff for MXO02357.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 69..837 1..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:03 Download gff for MXO02357.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 69..837 1..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:03 Download gff for MXO02357.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11689311..11689888 192..769 100 <- Minus
2R 11690446..11690586 51..191 100 <- Minus
2R 11690678..11690727 1..50 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:52 Download gff for MXO02357.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7577951..7578091 51..191 100 <- Minus
arm_2R 7578183..7578232 1..50 92   Minus
arm_2R 7576816..7577393 192..769 100 <- Minus