Clone MXO02358 Report

Search the DGRC for MXO02358

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:58
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptmbf1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02358.3prime Sequence

459 bp (459 high quality bases) assembled on 2007-01-19

> MXO02358.3prime
ATGGTCTAGAAAGCTTGCCTTTTTACCGGGAGGTGCTATTGGTTGGCCGC
GCTCCTTGCCGCGCAGCTTAATGCCGAGAACGCGTTCCATTTTACCCAGA
ATCAAGTTGTTTGGAATACCGCGACCGGCCTCGTAGTCGGTTACCACTTG
CTGCTTTTCGCAGATTTTAGTTGCCAGGTCCTTTTGGCTGAGGCCCTTGC
TCTGTCGTCCCTGCTGGATGAGCTTGCCCACATCGAGGGGAATCTTGTCG
TGGCGCAGCTCCTCGGTCTCGCGGTCTAGTTTGGCAGTGTTCTTGGTGGT
CACATGCTGCTTGTTGGTGCCAGCACCATACTTCTGTTGGGTATCCACGG
CGACTCCTTGACGGCGTGCCTGGTTGACCGCCGACTCCGTCTTGAGGGTC
GACGATTTCGGTGCTTTCTTCCGAAGAACAGTCACAGAGTCCCAGTCCGA
CATGTCGAC

MXO02358.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4143-PA 438 mbf1-RA 1..435 453..19 2150 99.7 Minus
CG4143-PB 438 mbf1-RB 1..435 453..19 2150 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..683 453..19 2160 99.8 Minus
mbf1-RB 1648 CG4143-RB 209..643 453..19 2160 99.8 Minus
mbf1-RA 1085 CG4143-RA 109..543 453..19 2160 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 329..169 805 100 Minus
3L 28110227 3L 16575717..16575866 168..19 750 100 Minus
3L 28110227 3L 16574853..16574976 453..330 605 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 19:32:11 has no hits.

MXO02358.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:44 Download gff for MXO02358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4143-PB 1..438 16..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:04 Download gff for MXO02358.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 103..547 15..459 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:46 Download gff for MXO02358.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 103..547 15..459 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:46 Download gff for MXO02358.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16574853..16574976 330..453 99 -> Minus
3L 16575187..16575347 169..329 100 -> Minus
3L 16575717..16575870 15..168 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:04 Download gff for MXO02358.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16567953..16568076 330..453 99 -> Minus
arm_3L 16568287..16568447 169..329 100 -> Minus
arm_3L 16568817..16568970 15..168 98   Minus

MXO02358.5prime Sequence

459 bp (459 high quality bases) assembled on 2007-01-19

> MXO02358.5prime
CAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGAAGAAAGCA
CCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAGGCACGCCG
TCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGGCACCAACA
AGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCGAGACCGAG
GAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTCATCCAGCA
GGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAACTAAAATCT
GCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCGGTATTCCA
AACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATTAAGCTGCG
CGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAAGGCAAGCT
TTCTAGACC

MXO02358.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4143-PA 438 mbf1-RA 1..435 9..443 2175 100 Plus
CG4143-PB 438 mbf1-RB 1..435 9..443 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..683 9..443 2175 100 Plus
mbf1-RB 1648 CG4143-RB 209..643 9..443 2175 100 Plus
mbf1-RA 1085 CG4143-RA 109..543 9..443 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 133..293 805 100 Plus
3L 28110227 3L 16575717..16575866 294..443 750 100 Plus
3L 28110227 3L 16574853..16574976 9..132 620 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:21:25 has no hits.

MXO02358.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:44 Download gff for MXO02358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4143-PB 1..438 9..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:15 Download gff for MXO02358.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..547 1..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:07 Download gff for MXO02358.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..547 1..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:07 Download gff for MXO02358.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16574853..16574976 9..132 100 -> Plus
3L 16575187..16575347 133..293 100 -> Plus
3L 16575717..16575870 294..447 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:15 Download gff for MXO02358.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16568817..16568970 294..447 98   Plus
arm_3L 16567953..16568076 9..132 100 -> Plus
arm_3L 16568287..16568447 133..293 100 -> Plus