MXO02360.3prime Sequence
881 bp (818 high quality bases) assembled on 2007-01-19
> MXO02360.3prime
ATGGTCTAGAAAGCTTGCGCAGTTTCCTGGCCAAGTTCGTGGTCTCAGCC
TCCTGTCTCCTTCATTCCCATAGCCCAATCCCGAATAGCTGGCATGCAAA
AAGTTCGGCGGAAGTTCCCTTGGACTATAAGGATCATACCTGAGCATCTG
TTGTTGATTCCACTGCATCATAGGATTACTATGACTGAGCCAAGGATTAT
GGGATTGGTTCCACGGACTATCATTTGTGATCACTGGTTCCTGCGGAGCA
GGCACAATTTCCCGACTTACAGCAGCCTTGTCCAGGGATTTTCTATTTGG
TGACGTTTCTTTTCTACCATTTAGTACGGATTTCCTATCGAGGGAGTTTT
TCAAACAAAGTTTTACACGCCCGAATCGAAAGGATATCGTTCCATTCAGT
TCGATCAGTTTCTTGTGCGATTCATTGTCAACTGCCATGGAAAGATGCAG
TAGCTCACCGTGGGTCAACCTGTTCATAACCCTCCATTCCGCCGTTGAGA
CTGGGTTCTGGGCCTGAATGATTTCCAAGACCTTCTGGCTGCTGGTGGTT
AGACTATCTGGAAAATATCCGAGAACGACATTCCTCCTTGGCAGTTCAGA
CTCATCCATTAGCTTCAGCTTAGTGGTTACTTTCGACTGGATGTGGCAAA
AATTTTGTTTGAACCATTCTGAGGTGGAGGAGTTGGAACAAGTCACAAGG
AGCCATCCTCTTCGAGCCACACATCCCTCGAACTGGGGCTTCTGACTGCC
AGATTTCTCCACGGTGACGTCGATAATGGCCTCCTTGATCATGGTCATTT
GCTCGCTGGTCAGGGAAGTCCCAGCAGACTCCGCAGCTAAGCCCGATCTC
ACGCACTCAACTAAACCCCGAGGGGTACGGA
MXO02360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-PA | 1095 | CG2217-RA | 231..1092 | 881..19 | 4200 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 2233 | CG2217-RD | 617..1478 | 881..19 | 4245 | 99.7 | Minus |
| CG2217-RC | 1768 | CG2217-RC | 617..1478 | 881..19 | 4245 | 99.7 | Minus |
| CG2217-RB | 4135 | CG2217-RB | 617..1478 | 881..19 | 4245 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30421494..30422355 | 19..881 | 4220 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:21 has no hits.
MXO02360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:45 Download gff for
MXO02360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-PA | 232..1095 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:11 Download gff for
MXO02360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42740-RB | 618..1478 | 19..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:52 Download gff for
MXO02360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RB | 618..1478 | 19..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:52 Download gff for
MXO02360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30421494..30422354 | 19..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:11 Download gff for
MXO02360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26247216..26248076 | 19..880 | 99 | | Plus |
MXO02360.5prime Sequence
793 bp (753 high quality bases) assembled on 2007-01-19
> MXO02360.5prime
CAGTCGACATGAATAGTTTAGAAGTAAATGAGTCTGATGCTGCTCCAGAA
GCATCACCCAACCGAAATCCTTCAGTGGATTCGGGTCCTGGCTTTGTCAG
GCTGAAAACCAGGCAAAAGAAGCTGCTGCGAAAGGCTCTTCATGGAGGGC
TGACCAGAGAAAAGGCTCTGGAGGTGGTGCAAGCTCTTCCCATAGTCAAG
GGACTCCTACCCGATCCTTATGAAAACCAAACCGCCAATCCGTACCCCTC
GGGTTTAGTTGAGTGCGTGAGAATCGGCTTAGCTGCGGAGTCTGCTGGGA
CTTCCCTGACCAGCGAGCAAATGACCATGATCAAGGAGGCCATTATCGAC
GTCACCGTGGAGAAATCTGGCAGTCAGAAGCCCCAGTTCGAGGGATGTGT
GGCTCGAAGAGGATGGCTCCTTGTGACTTGTTCCAACTCCTCCACCTCAG
AATGGTTCAAACAAAATTTTTGCCACATCCAGTCGAAAGTAACCACTAAG
CTGAAGCTAATGGATGAGTCTGAACTGCCAAGGAGGAATGTCGTTCTCGG
ATATTTTCCAGATAGTCTAACCACCAGCAGCCAGAAGGTCTTGGAAATCA
TTCAGGCCCAGAACCCAGTCTCAACGGCGGAATGGAGGGTTATGAACAGG
TTGACCCACGGTGAGCTACTGCATCTTTCCATGGCAGTTGACAATGAATC
GCACAAGAAACTGATCGAACTGAATGGAACGATATCCTTTCGATTCGGGC
GTGTAAAACTTTGTTTGAAAAACTCCCTCGATAGGAAATCCGT
MXO02360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-PA | 1095 | CG2217-RA | 1..785 | 9..793 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 2233 | CG2217-RD | 387..1171 | 9..793 | 3925 | 100 | Plus |
| CG2217-RC | 1768 | CG2217-RC | 387..1171 | 9..793 | 3925 | 100 | Plus |
| CG2217-RB | 4135 | CG2217-RB | 387..1171 | 9..793 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30421801..30422585 | 793..9 | 3925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:59 has no hits.
MXO02360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:46 Download gff for
MXO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-PA | 1..785 | 9..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:45 Download gff for
MXO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42740-RB | 387..1171 | 9..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:25 Download gff for
MXO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RB | 387..1171 | 9..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:25 Download gff for
MXO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30421801..30422585 | 9..793 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:45 Download gff for
MXO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26247523..26248307 | 9..793 | 100 | | Minus |
