MXO02361.3prime Sequence
835 bp (726 high quality bases) assembled on 2007-01-19
> MXO02361.3prime
ATGGTCTAGAAAGCTTGCATGATCAGCGACCAGCGGTCCCCAGAACATTT
TCGATATCTTCGAGTCGTCCTCGGTTAAAAAGAACTGACGGCCCAAATGC
ACAAACTCCTTGAGCGACAATTGGCCATCGCCGTTCTTGTCTATCACAGC
GAATGAAACGGCAGCATCGTCTTCGGTCAGTCCCAGACAACGGAAGAAGA
GCTTGTATTGTTCGAGATCCAAATGGCCAGTGTGATCAAAGTCCACAGCC
TTAAACAAGTAGGGCAGGAAGCGACCGATGCGTTTGGCCATCTTCTTGTC
GTTGAGACGATGGTGCAGATCGGTGAGGAACTGCTCGGCAGTTACCAGAT
TGTATGGGGTTATCTCCCCGAACTGCTCTTCCCAAGTATGCTTGATCACA
TCGTTGAATTCGGCAGCGACCTCTGGGGTCAAATGGCCCAGATCGCTAAA
GCGTTTGGCCAGCAAACTAAAGTCGTCGAAGGACACGACGCCGTCGTGAT
TAACGTCCAAAATGCGGTGGAGAGTACGCATTTTGCGGCGCCAGAATGCT
GAGTCGCCCCGTTCGCTGCGCTTGGAATCCATTTTCTGGCGACGACGCTC
GAACTCATCATCCGAGTCGGAATCGCTATCACTTTCCACCTCCCGTCGCA
ATTTGGCCGCTCCGGCCTTCTTTGAATATTGACGGACAGCCTGGACCACG
GCAGTTGGCATTTGATGCCAAAGCAGTGAATGTGCTCCATGTCCACAGAT
AATGCCGCCAGATGCCAGGCGGTGACAATCGCTGTGCGAAATGGGCGTGT
TTGGGGGCGGGGAGGCATTCTGCTGCAGAACGCCG
MXO02361.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1435-PA | 897 | CBP-RA | 78..894 | 835..19 | 4085 | 100 | Minus |
| CG1435-PB | 696 | CBP-RB | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CBP-RC | 2185 | CG1435-RC | 442..1258 | 835..19 | 4085 | 100 | Minus |
| CBP-RA | 2185 | CG1435-RA | 442..1258 | 835..19 | 4085 | 100 | Minus |
| CBP-RB | 2225 | CG1435-RB | 546..1298 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7341194..7341504 | 559..249 | 1555 | 100 | Minus |
| X | 23542271 | X | 7341572..7341804 | 251..19 | 1165 | 100 | Minus |
| X | 23542271 | X | 7340300..7340517 | 775..558 | 1075 | 99.5 | Minus |
| X | 23542271 | X | 7337793..7337856 | 835..772 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:45 has no hits.
MXO02361.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:46 Download gff for
MXO02361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1435-PA | 78..897 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:05 Download gff for
MXO02361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CBP-RA | 442..1258 | 19..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:10 Download gff for
MXO02361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CBP-RA | 442..1258 | 19..835 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:10 Download gff for
MXO02361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7337793..7337856 | 772..835 | 100 | -> | Minus |
| X | 7340304..7340516 | 559..771 | 100 | -> | Minus |
| X | 7341195..7341503 | 250..558 | 100 | -> | Minus |
| X | 7341574..7341804 | 19..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:05 Download gff for
MXO02361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7231826..7231889 | 772..835 | 100 | -> | Minus |
| arm_X | 7234337..7234549 | 559..771 | 100 | -> | Minus |
| arm_X | 7235228..7235536 | 250..558 | 100 | -> | Minus |
| arm_X | 7235607..7235837 | 19..249 | 100 | | Minus |
MXO02361.5prime Sequence
789 bp (686 high quality bases) assembled on 2007-01-19
> MXO02361.5prime
CAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGCGCACTTCA
AGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTTCTGCAGCA
GAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGATTGTCACC
GCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATTCACTGCTT
TGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAATATTCAAA
GAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGATAGCGATT
CCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGGATTCCAAG
CGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATGCGTACTCT
CCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTTCGACGACT
TTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGACCCCAGAG
GTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAAGAGCAGTT
CGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTTCCTCACCG
ATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCATCGGTCGC
TTCCTGCCCTACTTGTTTAAAGCTGTGGACTTTGATCACACTGGCCATTT
GGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACTGACCGAAG
ACGATGCTGCCGTTTCATTCGCTGTGATAGACAAAAACG
MXO02361.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1435-PA | 897 | CBP-RA | 1..776 | 9..784 | 3855 | 99.8 | Plus |
| CG1435-PB | 696 | CBP-RB | 1..575 | 210..784 | 2850 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CBP-RC | 2185 | CG1435-RC | 365..1145 | 9..789 | 3875 | 99.7 | Plus |
| CBP-RA | 2185 | CG1435-RA | 365..1145 | 9..789 | 3875 | 99.7 | Plus |
| CBP-RB | 2225 | CG1435-RB | 546..1185 | 150..789 | 3170 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7341194..7341502 | 362..670 | 1545 | 100 | Plus |
| X | 23542271 | X | 7340300..7340517 | 146..363 | 1075 | 99.5 | Plus |
| X | 23542271 | X | 7337716..7337856 | 9..149 | 705 | 100 | Plus |
| X | 23542271 | X | 7341574..7341691 | 672..789 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:52:09 has no hits.
MXO02361.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:46 Download gff for
MXO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1435-PA | 1..781 | 9..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:51 Download gff for
MXO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CBP-RA | 365..1145 | 9..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:30 Download gff for
MXO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CBP-RA | 365..1145 | 9..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:30 Download gff for
MXO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7337716..7337856 | 9..149 | 100 | -> | Plus |
| X | 7340304..7340516 | 150..362 | 100 | -> | Plus |
| X | 7341195..7341503 | 363..671 | 99 | -> | Plus |
| X | 7341574..7341691 | 672..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:51 Download gff for
MXO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7231749..7231889 | 9..149 | 100 | -> | Plus |
| arm_X | 7234337..7234549 | 150..362 | 100 | -> | Plus |
| arm_X | 7235228..7235536 | 363..671 | 99 | -> | Plus |
| arm_X | 7235607..7235724 | 672..789 | 99 | | Plus |
