Clone MXO02362 Report

Search the DGRC for MXO02362

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:62
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptbeta4GalNAcTA-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02362.3prime Sequence

735 bp (660 high quality bases) assembled on 2007-01-19

> MXO02362.3prime
ATGGTCTAGAAAGCTTGCACTTTTGCGCTCGGAGTTCTTTAGCTCTGCTA
AGTACCAAGTGAAAGTTGGAAATTGTTTGATGCTGTAGATAGAATACTTT
ATCGAGTTGATTCCATCCTGTTCTATTTTGCTCATGCCATTCTGTAAGTT
TTCATAGCGCTTAGGATTGGCCTTTTCCTTCTGATGCTTCAGCATCTTGT
AGCGAGCTATGTTGACCGGATACCTTGATATGAATAGGTTTGCGTGCTTC
AACCTGTTGGACATGTCGTCATCCTCGCCGCCCCAGCCAAAGAACGAGTT
TGAGAACCCATTTACGGCCTGAAAGTGCTCACGCGTCATTGCGGAAACAC
CTCCAAATATTGATCGATAAGGCAACCTGAAGTTCAGCGTGTCTATAGCC
ACTGACATGTGTCGCGGCTGACGTGGACAGTTGTAAAGATTGCGGTCGTC
CAAAGGCAGAAGATCGACATCGTGGAATATAAAACAATCCCACTGGTACA
GCTTTAAGGCCTCCAAATAACCAATGTTCATCATGGCAGCCCGATTAAAG
GGCTTCCCGTTGGTCTGCTCTACAATGAAAATGCGATAGGCGATGCGCTG
CTTCATCAGAAATGGGTGGATGTTGCGCANGAAAAGTAATAGATGGGCGT
ATCGATCGCGGAAGGGCACAACAATAGCCACGTGATGCTGGGCATTGCAG
TTTTCAGGCTCGAAGGCGCCACCAGGGCGCAAAAG

MXO02362.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8536-PA 1212 beta4GalNAcTA-RA 493..1209 735..19 3566 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 627..1343 735..19 3574 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259781..14260140 735..376 1789 99.7 Minus
2R 25286936 2R 14260195..14260415 378..158 1105 100 Minus
2R 25286936 2R 14260487..14260626 158..19 700 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:32:28 has no hits.

MXO02362.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:47 Download gff for MXO02362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 493..1212 18..735 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:14 Download gff for MXO02362.3prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 627..1347 13..735 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:56 Download gff for MXO02362.3prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 627..1347 13..735 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:56 Download gff for MXO02362.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14259781..14260139 377..735 99 -> Minus
2R 14260197..14260415 158..376 100 -> Minus
2R 14260488..14260630 13..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:14 Download gff for MXO02362.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10147286..10147644 377..735 99 -> Minus
arm_2R 10147702..10147920 158..376 100 -> Minus
arm_2R 10147993..10148135 13..157 97   Minus

MXO02362.5prime Sequence

815 bp (741 high quality bases) assembled on 2007-01-19

> MXO02362.5prime
CAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCTTCCTAGCC
GGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTCCGTTCCGA
CGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCGCGTGCACA
AGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCGGAGGCAGT
GAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAAGACAGAGA
GCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAGAACTGTGA
TTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGCGCTTCCTG
CTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACATCCGCCCT
CCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACCCATCACGC
CCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGCTTGGACCT
CTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAATGCCCAGCA
TCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCATCTATTAC
TTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCATCGCCTAT
CGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAATCGGGCTGC
CATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCAGTGGGATT
GTTTTATATTCCACCATGTCGATCTTCTGCCTTTGGACGACCGCAATCTT
TCCAACTGTCCACGT

MXO02362.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8536-PA 1212 beta4GalNAcTA-RA 1..807 9..815 3985 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 134..941 8..815 4010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259715..14260095 435..815 1875 99.5 Plus
2R 25286936 2R 14259355..14259660 132..437 1530 100 Plus
2R 25286936 2R 14259163..14259288 8..133 630 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:06:32 has no hits.

MXO02362.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:47 Download gff for MXO02362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 1..807 9..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:00 Download gff for MXO02362.5prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 126..941 1..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:34 Download gff for MXO02362.5prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 126..941 1..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:34 Download gff for MXO02362.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14259155..14259288 1..133 97 -> Plus
2R 14259357..14259658 134..435 100 -> Plus
2R 14259716..14260095 436..815 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:00 Download gff for MXO02362.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10146660..10146793 1..133 97 -> Plus
arm_2R 10146862..10147163 134..435 100 -> Plus
arm_2R 10147221..10147600 436..815 99   Plus