Clone MXO02364 Report

Search the DGRC for MXO02364

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:64
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3436-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02364.3prime Sequence

741 bp (713 high quality bases) assembled on 2007-01-19

> MXO02364.3prime
ATGGTCTAGAAAGCTTGCTTCATCGATCTCTCCCAGATACAAAGTCTTAT
CGCTGGATCCAGATAGAATCAGGGGTTCTTTTGGGCTGAAATCCACGGCA
TTGACACTGCCATTGTGTCCGGGCAGCTTGTAAAGAATTCTCCTTGTATT
TACATCCCAAATATAGACATGCCGATCGGCGGAACCCGATGTTATTTTAT
CGCTTCCCGGCGACCAAGCGCATCTCAGCAGATTCTTCTCAAAATTGTGC
TGATGGCCTTGGAATACCTTCACACATCTTTCCCCGGGTGCATAAGGTCT
CACGTCCCACACCCTCAAGGTGTTATCCATGGCATTTGTCAAGATAAAGT
CTCCTTCGGGGGACAAGGACATTCCGGTAATCGTATCCGAATGCCCTCGC
AGATGGTGCAAGACAGCCTGTTTTCGAATGTCCCAGATTTTGACTTCGTT
GTCGATCCCGCCGCTAATTACTTGTTCTCCAGTGTCACCAAAACAAACAG
CTGTGACTTGAAAAGGGGATTCCAAAGTGTGTGCCGCGTGTTTTTTCCTG
GCGTCCCAGATTTTTATGGTGCGATCATCGCTTCCCGAGCAGAGGAGCTG
TTGACCCCTACGCGAGCCCTGAACGCTGTTCACGAAGTTGCCATGCCCCT
TGAACCGCCGTTGCCGCTGGCCCGTGGCTATGTCCCAAAAGGCCAGAGTT
TTATCAGTGGAGCAGGTAAAAATGTGCGATCCATCCGGCGT

MXO02364.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PA 1044 CG3436-RA 319..1041 741..19 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 531..1253 741..19 3615 100 Minus
CG3436-RA 1261 CG3436-RA 411..1133 741..19 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156816..157538 741..19 3615 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:55:54 has no hits.

MXO02364.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:49 Download gff for MXO02364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 319..1044 16..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:09 Download gff for MXO02364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 411..1133 19..741 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:15 Download gff for MXO02364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 411..1133 19..741 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:15 Download gff for MXO02364.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 156816..157538 19..741 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:09 Download gff for MXO02364.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156816..157538 19..741 100   Minus

MXO02364.5prime Sequence

828 bp (785 high quality bases) assembled on 2007-01-19

> MXO02364.5prime
CAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTTTGGCCCAA
GAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAACAGGGACAA
AGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCAGGCGCCCA
TAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGGAATTCCAT
CCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAAATCTACAT
CTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTCGGGACACA
GCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGCACATTTTT
ACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCCACGGGCCA
GCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAGCGTTCAGG
GCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATGATCGCACC
ATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACTTTGGAATC
CCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGAACAAGTAA
TTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTCGAAAACAG
GCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACCGGAATGTC
CTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGATAACACCT
TGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGATGTGTGAAG
GTATTCCAAGGCCATCAACACAATTTTG

MXO02364.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PA 1044 CG3436-RA 1..820 9..828 4075 99.8 Plus
CG3436-PB 246 CG3436-RB 1..238 9..246 1190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 213..1032 9..828 4085 99.9 Plus
CG3436-RA 1261 CG3436-RA 93..912 9..828 4085 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156736..157317 247..828 2895 99.8 Plus
2L 23513712 2L 156422..156552 116..246 655 100 Plus
2L 23513712 2L 156241..156349 9..117 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:30:15 has no hits.

MXO02364.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:49 Download gff for MXO02364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 1..820 9..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:16 Download gff for MXO02364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..912 9..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:57 Download gff for MXO02364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..912 9..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:57 Download gff for MXO02364.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 156241..156348 9..116 100 -> Plus
2L 156423..156552 117..246 100 -> Plus
2L 156736..157317 247..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:16 Download gff for MXO02364.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156241..156348 9..116 100 -> Plus
arm_2L 156423..156552 117..246 100 -> Plus
arm_2L 156736..157317 247..828 99   Plus