Clone MXO02365 Report

Search the DGRC for MXO02365

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:65
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptRac2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02365.3prime Sequence

600 bp (600 high quality bases) assembled on 2007-01-19

> MXO02365.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGGCGCACTTGTGCCGCTTGGGTCCTC
GAACGACAGGACATAGCACGGATCGTATGGCCTCGTCGAAGACCGTCTTC
AGACCCTTTTGGGTCAGGGCCGAGCACTCCAGATACTTGACCGCAGCTAT
TTCCTTGGCCATCGCCAGTCCCTGGGGATAGGTGATCGGTGTTAGCTTCT
TGTCCTTCAGCTTCTCGATCGTCTGCTTATCGTCGCGCAGATCCAGTTTG
GTGCCGACCAGGATTATCGGCACACTCGGGCAATGATGACGCACCTCGGG
AAACCATTTGGCTCGCACATTCTCAAACGATGCCGGATTCACCAGTGAGA
AACAGATGAGAAAGACATCCGTTTGCGGATAGGATAGCGGCCTCAGGCGA
TCGTAGTCCTCCTGTCCAGCCGTATCCCAGAGGCCCAGATTGATGGGCTT
GGCATCCACCATCACATTCGCCGAATAGTTGTCGAACACCGTGGGTATGT
ACTCGCCGGGGAAGGCGTTGGTCGTATAGCTGATCAGCAGGCAGGTCTTT
CCCACCGCTCCGTCGCCCACAACCACACACTTGATGGCCTGCATGTCGAC

MXO02365.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8556-PA 579 Rac2-RA 1..576 594..19 2830 99.6 Minus
CG2248-PA 579 Rac1-RA 1..206 594..389 555 90.7 Minus
CG2248-PA 579 Rac1-RA 451..518 144..77 215 92.6 Minus
CG2248-PA 579 Rac1-RA 226..305 369..290 175 88.7 Minus
CG12530-PA 576 Cdc42-RA 169..233 426..362 175 90.7 Minus
CG12530-PB 576 Cdc42-RB 169..233 426..362 175 90.7 Minus
CG5588-PB 588 Mtl-RB 175..230 429..374 155 91 Minus
CG5588-PA 588 Mtl-RA 175..230 429..374 155 91 Minus
CG5588-PC 588 Mtl-RC 175..230 429..374 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1256 595..19 2855 99.7 Minus
Rac2-RA 1299 CG8556-RA 680..1256 595..19 2855 99.7 Minus
Rac1-RB 1805 CG2248-RB 337..855 595..77 1575 86.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433935..7434511 19..595 2855 99.7 Plus
3L 28110227 3L 1301829..1302347 77..595 1575 86.9 Plus
X 23542271 X 19697956..19698190 596..362 485 80.4 Minus
3R 32079331 3R 27638122..27638186 438..374 220 89.2 Minus
Blast to na_te.dros performed on 2014-11-28 19:32:38 has no hits.

MXO02365.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:49 Download gff for MXO02365.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8556-PA 1..579 15..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:21 Download gff for MXO02365.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 675..1266 10..600 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:01 Download gff for MXO02365.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 675..1266 10..600 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:01 Download gff for MXO02365.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7433925..7434515 10..600 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:21 Download gff for MXO02365.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427025..7427615 10..600 98   Plus

MXO02365.5prime Sequence

565 bp (492 high quality bases) assembled on 2007-01-19

> MXO02365.5prime
CAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACGGAGCGGTG
GGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTCCCCGGCGA
GTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGATGGTGGATG
CCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGGAGGACTAC
GATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTTCTCATCTG
TTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGCCAAATGGT
TTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCCTGGTCGGC
ACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAGCTGAAGGA
CAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGATGGCCAAGG
AAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCCAAAAGGGT
CTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGTCCTGTCGT
TCGAGGACCCAAGCG

MXO02365.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8556-PA 579 Rac2-RA 1..557 9..565 2735 99.6 Plus
CG2248-PA 579 Rac1-RA 1..206 9..214 555 90.7 Plus
CG2248-PA 579 Rac1-RA 451..518 459..526 215 92.6 Plus
CG2248-PA 579 Rac1-RA 226..305 234..313 175 88.7 Plus
CG12530-PA 576 Cdc42-RA 169..233 177..241 175 90.7 Plus
CG12530-PB 576 Cdc42-RB 169..233 177..241 175 90.7 Plus
CG5588-PB 588 Mtl-RB 175..230 174..229 155 91 Plus
CG5588-PA 588 Mtl-RA 175..230 174..229 155 91 Plus
CG5588-PC 588 Mtl-RC 175..230 174..229 155 91 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1237 8..565 2760 99.6 Plus
Rac2-RA 1299 CG8556-RA 680..1237 8..565 2760 99.6 Plus
Rac1-RB 1805 CG2248-RB 337..855 8..526 1575 86.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433954..7434511 565..8 2760 99.6 Minus
3L 28110227 3L 1301829..1302347 526..8 1575 86.9 Minus
X 23542271 X 19697956..19698190 7..241 485 80.4 Plus
3R 32079331 3R 27638122..27638186 165..229 220 89.2 Plus
Blast to na_te.dros performed on 2014-11-28 20:06:39 has no hits.

MXO02365.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:50 Download gff for MXO02365.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8556-PA 1..557 9..565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:03 Download gff for MXO02365.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 673..1237 1..565 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:39 Download gff for MXO02365.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 673..1237 1..565 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:39 Download gff for MXO02365.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7433954..7434514 1..565 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:03 Download gff for MXO02365.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427054..7427614 1..565 98   Minus