MXO02365.3prime Sequence
600 bp (600 high quality bases) assembled on 2007-01-19
> MXO02365.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGGCGCACTTGTGCCGCTTGGGTCCTC
GAACGACAGGACATAGCACGGATCGTATGGCCTCGTCGAAGACCGTCTTC
AGACCCTTTTGGGTCAGGGCCGAGCACTCCAGATACTTGACCGCAGCTAT
TTCCTTGGCCATCGCCAGTCCCTGGGGATAGGTGATCGGTGTTAGCTTCT
TGTCCTTCAGCTTCTCGATCGTCTGCTTATCGTCGCGCAGATCCAGTTTG
GTGCCGACCAGGATTATCGGCACACTCGGGCAATGATGACGCACCTCGGG
AAACCATTTGGCTCGCACATTCTCAAACGATGCCGGATTCACCAGTGAGA
AACAGATGAGAAAGACATCCGTTTGCGGATAGGATAGCGGCCTCAGGCGA
TCGTAGTCCTCCTGTCCAGCCGTATCCCAGAGGCCCAGATTGATGGGCTT
GGCATCCACCATCACATTCGCCGAATAGTTGTCGAACACCGTGGGTATGT
ACTCGCCGGGGAAGGCGTTGGTCGTATAGCTGATCAGCAGGCAGGTCTTT
CCCACCGCTCCGTCGCCCACAACCACACACTTGATGGCCTGCATGTCGAC
MXO02365.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8556-PA | 579 | Rac2-RA | 1..576 | 594..19 | 2830 | 99.6 | Minus |
CG2248-PA | 579 | Rac1-RA | 1..206 | 594..389 | 555 | 90.7 | Minus |
CG2248-PA | 579 | Rac1-RA | 451..518 | 144..77 | 215 | 92.6 | Minus |
CG2248-PA | 579 | Rac1-RA | 226..305 | 369..290 | 175 | 88.7 | Minus |
CG12530-PA | 576 | Cdc42-RA | 169..233 | 426..362 | 175 | 90.7 | Minus |
CG12530-PB | 576 | Cdc42-RB | 169..233 | 426..362 | 175 | 90.7 | Minus |
CG5588-PB | 588 | Mtl-RB | 175..230 | 429..374 | 155 | 91 | Minus |
CG5588-PA | 588 | Mtl-RA | 175..230 | 429..374 | 155 | 91 | Minus |
CG5588-PC | 588 | Mtl-RC | 175..230 | 429..374 | 155 | 91 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1256 | 595..19 | 2855 | 99.7 | Minus |
Rac2-RA | 1299 | CG8556-RA | 680..1256 | 595..19 | 2855 | 99.7 | Minus |
Rac1-RB | 1805 | CG2248-RB | 337..855 | 595..77 | 1575 | 86.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433935..7434511 | 19..595 | 2855 | 99.7 | Plus |
3L | 28110227 | 3L | 1301829..1302347 | 77..595 | 1575 | 86.9 | Plus |
X | 23542271 | X | 19697956..19698190 | 596..362 | 485 | 80.4 | Minus |
3R | 32079331 | 3R | 27638122..27638186 | 438..374 | 220 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:38 has no hits.
MXO02365.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:49 Download gff for
MXO02365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8556-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:21 Download gff for
MXO02365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 675..1266 | 10..600 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:01 Download gff for
MXO02365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 675..1266 | 10..600 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:01 Download gff for
MXO02365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433925..7434515 | 10..600 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:21 Download gff for
MXO02365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427025..7427615 | 10..600 | 98 | | Plus |
MXO02365.5prime Sequence
565 bp (492 high quality bases) assembled on 2007-01-19
> MXO02365.5prime
CAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACGGAGCGGTG
GGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTCCCCGGCGA
GTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGATGGTGGATG
CCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGGAGGACTAC
GATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTTCTCATCTG
TTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGCCAAATGGT
TTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCCTGGTCGGC
ACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAGCTGAAGGA
CAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGATGGCCAAGG
AAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCCAAAAGGGT
CTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGTCCTGTCGT
TCGAGGACCCAAGCG
MXO02365.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8556-PA | 579 | Rac2-RA | 1..557 | 9..565 | 2735 | 99.6 | Plus |
CG2248-PA | 579 | Rac1-RA | 1..206 | 9..214 | 555 | 90.7 | Plus |
CG2248-PA | 579 | Rac1-RA | 451..518 | 459..526 | 215 | 92.6 | Plus |
CG2248-PA | 579 | Rac1-RA | 226..305 | 234..313 | 175 | 88.7 | Plus |
CG12530-PA | 576 | Cdc42-RA | 169..233 | 177..241 | 175 | 90.7 | Plus |
CG12530-PB | 576 | Cdc42-RB | 169..233 | 177..241 | 175 | 90.7 | Plus |
CG5588-PB | 588 | Mtl-RB | 175..230 | 174..229 | 155 | 91 | Plus |
CG5588-PA | 588 | Mtl-RA | 175..230 | 174..229 | 155 | 91 | Plus |
CG5588-PC | 588 | Mtl-RC | 175..230 | 174..229 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1237 | 8..565 | 2760 | 99.6 | Plus |
Rac2-RA | 1299 | CG8556-RA | 680..1237 | 8..565 | 2760 | 99.6 | Plus |
Rac1-RB | 1805 | CG2248-RB | 337..855 | 8..526 | 1575 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433954..7434511 | 565..8 | 2760 | 99.6 | Minus |
3L | 28110227 | 3L | 1301829..1302347 | 526..8 | 1575 | 86.9 | Minus |
X | 23542271 | X | 19697956..19698190 | 7..241 | 485 | 80.4 | Plus |
3R | 32079331 | 3R | 27638122..27638186 | 165..229 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:39 has no hits.
MXO02365.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:50 Download gff for
MXO02365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8556-PA | 1..557 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:03 Download gff for
MXO02365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 673..1237 | 1..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:39 Download gff for
MXO02365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 673..1237 | 1..565 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:39 Download gff for
MXO02365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433954..7434514 | 1..565 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:03 Download gff for
MXO02365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427054..7427614 | 1..565 | 98 | | Minus |