Clone MXO02366 Report

Search the DGRC for MXO02366

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:66
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG8297-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02366.3prime Sequence

688 bp (642 high quality bases) assembled on 2007-01-19

> MXO02366.3prime
ATGGTCTAGAAAGCTTGCGTCCACCATCTCCATTTGCGTCTCCTCGGATT
CCCGCCAAATGCGCTGCACCATCTCTACCAGCTGCTTCCAGAGCGCCGTC
TTACGCAGGAAGTTGGCAAGGCAGACGAGAATAAAGGCCCAAGCCAGGCC
CAAATAGTAATCCGTCTGCACAATGGGTTTATTAGACAGCGGCTCCATCT
CTGCGCGAGTGAGGATGATCGGATCAATGGCCTGCGGATTCACAGTCTTC
ATATTGGTGTGACTCATTATGAAACTGGCAAAGCTGCTCTTTGTGTCCTT
CCACCCGGGCTCGAATTTGATTAGCGGCCTGCCCTGGTGGAATAGCATCA
GTGTGGGCAGCGAAACGATGCCGAATTCTGCATTGAAACGACCAAACTCA
TAGGCATCCACATAGGCGATGGGTAGCGTGGGAAAGTAATGGGGCAGCAC
GTTGACCATCGAAGCCACACGAGCGCACTCCAAGCTGGATGCGGTGCAGA
AATGGACAAGCACACAGTTGCCCGGCTCGTGGCGCTTGGTGGCATTGCCC
ATGGGCTTAAGCAGATTCACTATATCCTTGGCACTGCGCATTATCAGCAG
TTCCGGCTCGGATGCTGTCTCATTCCTCGATATCCCGCTGCAGGCACTTC
ATCATAATAGGTGGCTTTCGAACCGGAAGCAGCTGGTT

MXO02366.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8297-PA 888 CG8297-RA 217..885 688..19 3260 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8297-RA 1057 CG8297-RA 288..956 688..19 3295 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15935169..15935837 688..19 3270 99.6 Minus
Blast to na_te.dros performed 2014-11-28 18:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 202..272 160..229 109 63.4 Plus
Tabor 7345 Tabor TABOR 7345bp 7041..7111 160..229 109 63.4 Plus

MXO02366.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:50 Download gff for MXO02366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8297-PA 217..888 18..688 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:43 Download gff for MXO02366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 288..961 11..688 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:27 Download gff for MXO02366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 288..961 11..688 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:27 Download gff for MXO02366.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15935169..15935842 11..688 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:43 Download gff for MXO02366.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11822674..11823347 11..688 98   Minus

MXO02366.5prime Sequence

762 bp (528 high quality bases) assembled on 2007-01-19

> MXO02366.5prime
CAGTCGACATGAACCAAAATCTCTTGTTTGTATTTTTGCTCTGCGCCGCG
CAGGGCCAGGCGGAACTCTCCGGATTACTAAGTGCCCTCCAGTATTTCGG
GCTCTTCTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCGGGGCCAGT
GCCATTATAGCTTCGAAACCTTGCTGAAGGAGCGACACACATGTGCCCCG
GATGACGAGCACATCATGCACCTAAACCAGCTGCCTCCGGTTCGAAAGCC
ACCTATTATGATGAAGTGCCTGCAGCGGGATATCGAGAATGAGACAGCAT
CCGAGCCGGAACTGCTGATAATGCGCAGTGCCAAGGATATAGTGAATCTG
CTTAAGCCCATGGGCAATGCCACCAAGCGCCACGAGCCGGGCAACTGTGT
GCTTGTCCATTTCTGCACCGCATCCAGCTTGGAGTGCGCTCGTGTGGCTT
CGATGGTCAACGTGCTGCCCCATTACTTTCCCACGCTACCCATCGCCTAT
GTGGATGCCTATGAGTTTGGTCGTTTCAATGCAGAATTCGGCATCGTTTC
GCTGCCCACACTGATGCTATTCCACCAGGGCAGGCCGCTAATCAAATTCG
AGCCCGGGTGGAAGGACACAAAGAGCAGCTTTGCCAGTTTCATAATGAGT
CACACCAATATGAAGACTGTGAATCCGCAGGCCATTGATCCGATCATCCT
CACTCGCGCAGAGATGGAGCCGCTGTCTAATAAACCCATTGTGCAGACTG
ATTACTATTTGG

MXO02366.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8297-PA 888 CG8297-RA 1..754 9..762 3720 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8297-RA 1057 CG8297-RA 72..825 9..762 3740 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15934981..15935706 37..762 3600 99.7 Plus
Blast to na_te.dros performed 2014-11-28 22:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 202..272 752..683 109 63.4 Minus
Tabor 7345 Tabor TABOR 7345bp 7041..7111 752..683 109 63.4 Minus

MXO02366.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:51 Download gff for MXO02366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8297-PA 1..754 9..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:18 Download gff for MXO02366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 72..825 9..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:11 Download gff for MXO02366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 72..825 9..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:11 Download gff for MXO02366.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15934896..15934923 9..36 100 -> Plus
2R 15934981..15935706 37..762 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:18 Download gff for MXO02366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11822401..11822428 9..36 100 -> Plus
arm_2R 11822486..11823211 37..762 99   Plus