MXO02367.5prime Sequence
676 bp (650 high quality bases) assembled on 2007-01-19
> MXO02367.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AATCTGATCATCTCACATAAATTCCT
MXO02367.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:58:28 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:46:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 22:46:05 has no hits.
Blast to na_te.dros performed on 2014-11-28 22:46:06 has no hits.
MXO02367.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:39:38 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:39:38 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:03:56 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:03:56 has no hits.
MXO02367.3prime Sequence
577 bp (576 high quality bases) assembled on 2007-01-19
> MXO02367.3prime
ATGGTCTAGAAAGCTTGCAACCTCGTAGCCGTAGGATTTGATGATTTTGT
TGAAGGGCTCGGCGGCCTTCGCGATGTTCTCGCGCGCCTTGACCGTCAGC
TTCTTCAGCTCGCGGTTGTGCTTGAGGGTGACACGGAGCTTGGCCTTGCG
CTTGCGCTCCAGGCTCTTGATCACGTCCTGGTAGTGCCATCCGACCTCGT
GCGACAGGCGACCCACCTGGCAGTACTTGCGGTCGGAGCGCAGGGTCAGC
ACACGCATAGCGATGGGCACGACGACGCGGCGACGCTTGTCGTAGGGCGA
TGGGATGCCGTCGAACACACGCAGACGGGCGAGGGCGGCCTGGCCACGCT
TGGTCTTGTGTGGGATCATGCCTCGGACTGCCTTGTAGAAGATGCGAGAG
GGGGCACGGAAGTGGAATGGACCACGGGCTGGGTTCACGTTGCACCGCTT
GCGCAGGTAGGCCAGGAACTTGATCTTGTTCCTGTAGAAGTGTCCCGAGA
GGTTCAGCTCCTCGCAGCGGACCACGGCCACCTTGCCGCCCTGCAACAGG
TACTTGGCCACCACGGAGGCCAGGCGA
MXO02367.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1475-PB | 618 | RpL13A-RB | 57..615 | 577..19 | 2745 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL13A-RB | 722 | CG1475-RB | 83..641 | 577..19 | 2765 | 99.6 | Minus |
| RpL13A-RC | 903 | CG1475-RC | 468..822 | 373..19 | 1745 | 99.4 | Minus |
| RpL13A-RC | 903 | CG1475-RC | 83..289 | 577..371 | 1035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5625512..5625866 | 373..19 | 1745 | 99.4 | Minus |
| 3R | 32079331 | 3R | 5624925..5625131 | 577..371 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:29 has no hits.
MXO02367.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:51 Download gff for
MXO02367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1475-PB | 58..618 | 15..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:36 Download gff for
MXO02367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13A-RB | 84..645 | 14..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:05 Download gff for
MXO02367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13A-RB | 84..645 | 14..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:05 Download gff for
MXO02367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5624926..5625130 | 372..576 | 100 | -> | Minus |
| 3R | 5625514..5625870 | 14..371 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:36 Download gff for
MXO02367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1450648..1450852 | 372..576 | 100 | -> | Minus |
| arm_3R | 1451236..1451592 | 14..371 | 98 | | Minus |
