MXO02371.3prime Sequence
483 bp (354 high quality bases) assembled on 2007-01-19
> MXO02371.3prime
ATGGTCTAGAAAGCTTGCTTGCATGGCTCTGCCGACTCCATCGAAAGCCT
TTTCCTTGTGATCCGCTGCATTGGCACGGGATTCGTAGTTGCATATGCTT
ACGCCATGGTAATGAGCTTCTGTGAACTCTCCTCGAAGACCTATATAGTA
AATGCGTGTTATGTCTTCGCCAAAATTGCTGGGAAAGTAGAGGGAGAGAT
GGTGCACGGAGGAGAAGGTGACCACTTTGGGTGAGTACTCGATTTCTCCG
CGGGCATCGCGGGTCAGCTGGAACTCCTGGTCGGGCTTTGCTCTGGCATC
ATCAAAGGTCATCCTGGGTCGGTTCTTGAAGATTTTGACCATGTTTGGAT
GGGAGTCATCATTGGACCCACTTATGATGATGCCCCCCCCCCCGATGTTG
CCGGTGAAGGGAATGAAAAAAAAGAGGTCTTCATCCGCATCGCTCTCCAC
GTACTTGGACAGATCCTGGCGCTTCTCGTACGG
MXO02371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6153-PA | 636 | CG6153-RA | 267..629 | 385..23 | 1765 | 99.4 | Minus |
| CG6153-PA | 636 | CG6153-RA | 169..224 | 483..428 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6153-RC | 821 | CG6153-RC | 259..723 | 483..19 | 2085 | 96.6 | Minus |
| CG6153-RA | 774 | CG6153-RA | 259..723 | 483..19 | 2085 | 96.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12693466..12693658 | 331..139 | 965 | 100 | Minus |
| 2L | 23513712 | 2L | 12693718..12693841 | 142..19 | 590 | 98.4 | Minus |
| 2L | 23513712 | 2L | 12693251..12693402 | 483..332 | 550 | 90.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:32 has no hits.
MXO02371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:53 Download gff for
MXO02371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-PA | 169..636 | 18..483 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:32 Download gff for
MXO02371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-RA | 259..730 | 11..483 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:59 Download gff for
MXO02371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-RA | 259..730 | 11..483 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:59 Download gff for
MXO02371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12693466..12693656 | 141..331 | 100 | -> | Minus |
| 2L | 12693720..12693848 | 11..140 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:32 Download gff for
MXO02371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12693466..12693656 | 141..331 | 100 | -> | Minus |
| arm_2L | 12693720..12693848 | 11..140 | 95 | | Minus |
MXO02371.5prime Sequence
620 bp (588 high quality bases) assembled on 2007-01-19
> MXO02371.5prime
CAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCTGCAGCCAC
GAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAGTACAGCTT
GTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGAGGAGACGG
ATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCCAGGATCTG
TCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTCAACATTCC
CTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGGGGCCAATG
ATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGACCCAGGATG
ACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAGCTGACCCG
CGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCACCTTCTCCT
CCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCGAAGACATA
ACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAACTCATTAC
CTGGCGTACCTATGCAACTACATCCCGTGCCATGCACGGATCCAGGAAAG
GTTTCGATGGATCGCAACAT
MXO02371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6153-PA | 636 | CG6153-RA | 1..580 | 9..582 | 2685 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6153-RC | 821 | CG6153-RC | 91..705 | 9..611 | 2785 | 98 | Plus |
| CG6153-RA | 774 | CG6153-RA | 91..705 | 9..611 | 2785 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12693083..12693402 | 9..328 | 1600 | 100 | Plus |
| 2L | 23513712 | 2L | 12693466..12693658 | 329..521 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:41 has no hits.
MXO02371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:53 Download gff for
MXO02371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-PA | 1..601 | 9..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:46 Download gff for
MXO02371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-RA | 91..691 | 9..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:48 Download gff for
MXO02371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-RA | 91..691 | 9..599 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:48 Download gff for
MXO02371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12693083..12693402 | 9..328 | 100 | -> | Plus |
| 2L | 12693466..12693656 | 329..519 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:46 Download gff for
MXO02371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12693083..12693402 | 9..328 | 100 | -> | Plus |
| arm_2L | 12693466..12693656 | 329..519 | 100 | -> | Plus |
