Clone MXO02375 Report

Search the DGRC for MXO02375

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:75
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptcbx-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02375.3prime Sequence

756 bp (756 high quality bases) assembled on 2007-01-19

> MXO02375.3prime
ATGGTCTAGAAAGCTTGCCTCAATGCTAAGTGGCTTAAACTCGCCCTCCT
TAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGAA
GGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCCC
GTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCGG
TGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTGT
ACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCTC
GCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGAT
CGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTCT
CCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGTA
CGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGAA
GACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAAA
ACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACTG
CAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCCG
ACTCAATCATTTTGTATTCGGCCAGAATTTTATACTCCTGCTGTATGGTT
GTGATCAGCAACTTGTCATCTTTCTTATGCGCATCCAAATCGAGAGTCAT
GTCGAC

MXO02375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PB 735 cbx-RB 1..732 750..19 3660 100 Minus
CG10536-PA 645 cbx-RA 1..642 660..19 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 94..825 750..19 3660 100 Minus
cbx-RA 1036 CG10536-RA 253..953 719..19 3505 100 Minus
cbx-RC 766 CG10536-RC 72..456 723..321 1735 95.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864593..9865070 19..496 2390 100 Plus
2R 25286936 2R 9865124..9865227 496..599 520 100 Plus
2R 25286936 2R 9865424..9865509 665..750 430 100 Plus
2R 25286936 2R 9865290..9865354 600..664 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:21:40 has no hits.

MXO02375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:55 Download gff for MXO02375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 1..735 15..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:20 Download gff for MXO02375.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 88..828 15..756 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:13 Download gff for MXO02375.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 88..828 15..756 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:13 Download gff for MXO02375.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864589..9865069 15..495 99 <- Plus
2R 9865124..9865227 496..599 100 <- Plus
2R 9865290..9865354 600..664 100 <- Plus
2R 9865424..9865515 665..756 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:20 Download gff for MXO02375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752094..5752574 15..495 99 <- Plus
arm_2R 5752629..5752732 496..599 100 <- Plus
arm_2R 5752795..5752859 600..664 100 <- Plus
arm_2R 5752929..5753020 665..756 96   Plus

MXO02375.5prime Sequence

516 bp (479 high quality bases) assembled on 2007-01-19

> MXO02375.5prime
CAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATGACAAGTTG
CTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAATACAAAAT
GATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAGCTATGCTA
ACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCTTGTATGCG
GAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTTCCCGACGA
CAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCATCCCCATG
TGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCCCGGAGTGG
CGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTGCAAGTCAT
TTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGATAAGCTCA
AAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGGAGTATGTT
GCTCGCGTACGGGAAA

MXO02375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PB 735 cbx-RB 1..508 9..516 2515 99.8 Plus
CG10536-PA 645 cbx-RA 1..418 99..516 2065 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 94..601 9..516 2525 99.8 Plus
cbx-RA 1036 CG10536-RA 253..729 40..516 2370 99.8 Plus
cbx-RC 766 CG10536-RC 72..456 36..438 1735 95.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864817..9865070 516..263 1255 99.6 Minus
2R 25286936 2R 9865124..9865227 263..160 520 100 Minus
2R 25286936 2R 9865424..9865509 94..9 430 100 Minus
2R 25286936 2R 9865290..9865354 159..95 325 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:34:11 has no hits.

MXO02375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:55 Download gff for MXO02375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 1..505 9..513 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:36 Download gff for MXO02375.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 86..598 1..513 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:45 Download gff for MXO02375.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 86..598 1..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:45 Download gff for MXO02375.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864820..9865069 264..513 99 <- Minus
2R 9865124..9865227 160..263 100 <- Minus
2R 9865290..9865354 95..159 100 <- Minus
2R 9865424..9865517 1..94 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:36 Download gff for MXO02375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752325..5752574 264..513 99 <- Minus
arm_2R 5752629..5752732 160..263 100 <- Minus
arm_2R 5752795..5752859 95..159 100 <- Minus
arm_2R 5752929..5753022 1..94 95   Minus