MXO02375.3prime Sequence
756 bp (756 high quality bases) assembled on 2007-01-19
> MXO02375.3prime
ATGGTCTAGAAAGCTTGCCTCAATGCTAAGTGGCTTAAACTCGCCCTCCT
TAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGAA
GGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCCC
GTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCGG
TGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTGT
ACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCTC
GCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGAT
CGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTCT
CCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGTA
CGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGAA
GACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAAA
ACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACTG
CAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCCG
ACTCAATCATTTTGTATTCGGCCAGAATTTTATACTCCTGCTGTATGGTT
GTGATCAGCAACTTGTCATCTTTCTTATGCGCATCCAAATCGAGAGTCAT
GTCGAC
MXO02375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PB | 735 | cbx-RB | 1..732 | 750..19 | 3660 | 100 | Minus |
CG10536-PA | 645 | cbx-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..825 | 750..19 | 3660 | 100 | Minus |
cbx-RA | 1036 | CG10536-RA | 253..953 | 719..19 | 3505 | 100 | Minus |
cbx-RC | 766 | CG10536-RC | 72..456 | 723..321 | 1735 | 95.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864593..9865070 | 19..496 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 9865124..9865227 | 496..599 | 520 | 100 | Plus |
2R | 25286936 | 2R | 9865424..9865509 | 665..750 | 430 | 100 | Plus |
2R | 25286936 | 2R | 9865290..9865354 | 600..664 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:40 has no hits.
MXO02375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:55 Download gff for
MXO02375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 1..735 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:20 Download gff for
MXO02375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 88..828 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:13 Download gff for
MXO02375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 88..828 | 15..756 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:13 Download gff for
MXO02375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864589..9865069 | 15..495 | 99 | <- | Plus |
2R | 9865124..9865227 | 496..599 | 100 | <- | Plus |
2R | 9865290..9865354 | 600..664 | 100 | <- | Plus |
2R | 9865424..9865515 | 665..756 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:20 Download gff for
MXO02375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752094..5752574 | 15..495 | 99 | <- | Plus |
arm_2R | 5752629..5752732 | 496..599 | 100 | <- | Plus |
arm_2R | 5752795..5752859 | 600..664 | 100 | <- | Plus |
arm_2R | 5752929..5753020 | 665..756 | 96 | | Plus |
MXO02375.5prime Sequence
516 bp (479 high quality bases) assembled on 2007-01-19
> MXO02375.5prime
CAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATGACAAGTTG
CTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAATACAAAAT
GATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAGCTATGCTA
ACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCTTGTATGCG
GAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTTCCCGACGA
CAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCATCCCCATG
TGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCCCGGAGTGG
CGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTGCAAGTCAT
TTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGATAAGCTCA
AAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGGAGTATGTT
GCTCGCGTACGGGAAA
MXO02375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PB | 735 | cbx-RB | 1..508 | 9..516 | 2515 | 99.8 | Plus |
CG10536-PA | 645 | cbx-RA | 1..418 | 99..516 | 2065 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..601 | 9..516 | 2525 | 99.8 | Plus |
cbx-RA | 1036 | CG10536-RA | 253..729 | 40..516 | 2370 | 99.8 | Plus |
cbx-RC | 766 | CG10536-RC | 72..456 | 36..438 | 1735 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864817..9865070 | 516..263 | 1255 | 99.6 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 263..160 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865424..9865509 | 94..9 | 430 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865354 | 159..95 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:34:11 has no hits.
MXO02375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:55 Download gff for
MXO02375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 1..505 | 9..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:36 Download gff for
MXO02375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 86..598 | 1..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:45 Download gff for
MXO02375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 86..598 | 1..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:45 Download gff for
MXO02375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864820..9865069 | 264..513 | 99 | <- | Minus |
2R | 9865124..9865227 | 160..263 | 100 | <- | Minus |
2R | 9865290..9865354 | 95..159 | 100 | <- | Minus |
2R | 9865424..9865517 | 1..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:36 Download gff for
MXO02375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752325..5752574 | 264..513 | 99 | <- | Minus |
arm_2R | 5752629..5752732 | 160..263 | 100 | <- | Minus |
arm_2R | 5752795..5752859 | 95..159 | 100 | <- | Minus |
arm_2R | 5752929..5753022 | 1..94 | 95 | | Minus |