MXO02376.5prime Sequence
482 bp (458 high quality bases) assembled on 2007-01-19
> MXO02376.5prime
CAGTCGACATGGGCAATACAGCCATCACCCGAGTGCAAATGGAGGCCACG
AAGAGTGTGCCGGTGGACCACGCCAAGTACATGAGCGGCAGTGGTGCCCC
GCCACCAGAATGCCCCATGCATCAGAAGCATGGAGATGCAAAATCGGCCT
CCGCCGTACCCCCACATCCCAAGATGCAGGCCGCTTCCGAATGTCCGGTG
CAGCACGACAACAGCGACGTTAATCCGCTGAATATGATGCCACCGGCAAA
CCAACAGCCGGCGGCAGATCAGCCCTTTCCACTGCCCACCGACCGCCAGA
CGTCGACCATTCCCAAAGTCACCGAGGATGGCAGCGTTCAATTCTGGCAG
TATCCCAGCCAACAGATGTTCTGGAACGCCATGCTACGCAAGGGCTGGCG
CTGGAAGACCGAGGACGTATCGCAAAAGGACATGGGCGACATCATACGCA
TCCACAATGCCCACAACGAGCAGGCCTGGCAA
MXO02376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6022-PA | 846 | CG6022-RA | 1..473 | 9..481 | 2340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-RB | 1190 | CG6022-RB | 185..657 | 9..481 | 2350 | 99.8 | Plus |
| Cchl-RA | 1356 | CG6022-RA | 351..823 | 9..481 | 2350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22026565..22027037 | 481..9 | 2350 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:09 has no hits.
MXO02376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:56 Download gff for
MXO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6022-PA | 1..472 | 9..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:56 Download gff for
MXO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 343..822 | 1..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:38 Download gff for
MXO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 343..822 | 1..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:38 Download gff for
MXO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22026566..22027045 | 1..480 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:56 Download gff for
MXO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17852288..17852767 | 1..480 | 99 | | Minus |
MXO02376.3prime Sequence
342 bp (339 high quality bases) assembled on 2007-01-19
> MXO02376.3prime
ATGGTCTAGAAAGCTTGCGTCCCTACCAGCGGTCACTTTGCCGCCATCCG
CGCTGCCAAACTTCTCAAACAGCTCGTACTTCCAGCGCATGTAAGCTACG
CGCATTCTGTCCCAAACGTTGTCCACGGAGTCCATGGCTGGGCCCACATC
CAGCAGGGCAAAGCGGTAGTCTTTGTCCACCAGTCCACCGTCGTAGTAGT
CGATGACGTAGCGCACATCCTTGCCGCAGCGATCGACTATCCAGTCATGC
CTATCGAATGGCAGCTCGTATCCCAGCCAGCTGCGGAATCAAGCGCGCGG
ACTGAAGTCCTTGGCCTTGCCACCGAAACTCTTGAGGCGCGG
MXO02376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6022-PA | 846 | CG6022-RA | 520..839 | 342..23 | 1550 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-RB | 1190 | CG6022-RB | 704..1027 | 342..19 | 1575 | 99.1 | Minus |
| Cchl-RA | 1356 | CG6022-RA | 870..1193 | 342..19 | 1575 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22026138..22026391 | 19..272 | 1240 | 99.2 | Plus |
| 3R | 32079331 | 3R | 22026448..22026518 | 272..342 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:12 has no hits.
MXO02376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:55 Download gff for
MXO02376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6022-PA | 520..846 | 18..342 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:21 Download gff for
MXO02376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 870..1193 | 19..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:27 Download gff for
MXO02376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 870..1193 | 19..342 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:27 Download gff for
MXO02376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22026138..22026390 | 19..271 | 99 | <- | Plus |
| 3R | 22026448..22026518 | 272..342 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:21 Download gff for
MXO02376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17851860..17852112 | 19..271 | 99 | <- | Plus |
| arm_3R | 17852170..17852240 | 272..342 | 98 | | Plus |
