Clone MXO02380 Report

Search the DGRC for MXO02380

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:80
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptDf31-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02380.3prime Sequence

573 bp (573 high quality bases) assembled on 2007-01-19

> MXO02380.3prime
ATGGTCTAGAAAGCTTGCGGCGGCCACTTCGCTAGCCTCGGCCCCATTCT
GAACCTCATCCTTTGTGCTGGCCTCATCAAGCTTAGCCTTTTTCTCCGGC
GTGGCGACGGCCTCATCTGCCTTGGCTGCAGCCTCATCCACCTTCCGCTT
TACAGCCTCAATGGCGGGAGCATCTGTTGAGTCACCGTTGGTGACCTCCT
CGGAGCCATTCTCGACAGCAGGTAGAACAGCTTCGCTGCTCTCTTTTTTG
GTGTCCTCCCCATCGGCAGCGGAATCCTCTTTTTTATCCTCGTCCTTCTT
CTCATCCTTATCGGCGGCAAAAGAAACAGTGGGCTCAGACGCCTTTTCAC
CATCGACTGCGTCGGTGGGCTCGGTCGCGCTGCTGTCGGCGGCTCCGTTC
TCCTTGGCTACGCTCTCCTCTTCGGCGCCACCGTTTTCTGTGATGCTCGC
CTTCTCAGCTGCTACCTCCTCGGCGGCAACTGCATCTTTCTTCACAGCAT
CAACTTCCTCAGCTGCGACCTTCTCGACAACAGGGGTCTCATTCTTTTGC
TCAGCCACATCAGCCATGTCGAC

MXO02380.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2207-PF 552 Df31-RF 1..549 567..19 2745 100 Minus
CG2207-PA 552 Df31-RA 1..549 567..19 2745 100 Minus
CG2207-PB 552 Df31-RB 1..549 567..19 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 1424 CG2207-RB 133..681 567..19 2745 100 Minus
Df31-RA 1532 CG2207-RA 241..789 567..19 2745 100 Minus
Df31-RF 2083 CG2207-RF 241..789 567..19 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21627842..21628209 174..541 1840 100 Plus
2L 23513712 2L 21627603..21627761 19..177 795 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:20:30 has no hits.

MXO02380.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:59 Download gff for MXO02380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PB 1..552 15..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:55 Download gff for MXO02380.3prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 235..793 14..573 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:41 Download gff for MXO02380.3prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 235..793 14..573 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:41 Download gff for MXO02380.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21627599..21627757 14..173 98 <- Plus
2L 21627842..21628209 174..541 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:55 Download gff for MXO02380.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21627599..21627757 14..173 98 <- Plus
arm_2L 21627842..21628209 174..541 100 <- Plus

MXO02380.5prime Sequence

788 bp (785 high quality bases) assembled on 2007-01-19

> MXO02380.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCAGCGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTG
TCGCAAACTATCACGGCTACCACATCGTCTTTGCATTA

MXO02380.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 06:00:54 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 20:23:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 20:23:30 has no hits.
Blast to na_te.dros performed on 2014-11-28 20:23:30 has no hits.

MXO02380.5prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:04:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:04:35 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:48:37 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:48:37 has no hits.