MXO02381.3prime Sequence
666 bp (601 high quality bases) assembled on 2007-01-19
> MXO02381.3prime
ATGGTCTAGAAAGCTTGCGCTTTCTTCCACCAGGGAGAAGCTGAGGCGTC
TCTTCGTGGCGTCTCTGGCCTGCACTTGCAACCACATGGCATCCAGCTGA
CAGGCATCCTCCAGCTCCTCGCCACCCAACTCCAGTCCGCGACTCAGCTG
GCAGTGCTCCTCCTCCAGCTCGCAGTCGCTGGTGGAATTGTGCCCACTGT
CCGGACTGATGTGGCGCATCTTCTGGGCGGGAGCTGCTATGGATCCGGAC
CTGGCCGCTGCAAGCAGCTTCTGCGCCGACTGCCTGACGCTGGAGGAGAT
CTTTGTGGTGATCTTTCGCTTGCGCCGCACCACCCGCTGCCTGCGCAGCT
GCAGGGAATGCCGCTTGGCATCCTGCGATTCGGATACGGTGGGCACGGGG
GAGCGCACCTCCCGCTCCTCGAAGCCCTCCGCTGGCAGGGAATCCCTCCG
CGAGGGCGACTTCCAGTACTCGCACAGATCGCTGGCCGGATCGAAGGCGG
GGCGGTAGGTGGGCGATGGCGTCTGGGTGGGGCCGTGCCCGTGTCCGTGG
CTGCTCCGGAGCACCTGCTGCCTGAGCCTGTGCCGCTGGCGGAGATGCTG
CCTGGGCTGGCGGTGCTGATGCTGGTGCTGTTGCTGTCTGGCGTTGGGCA
GCACCTTGCGGTTGCT
MXO02381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PA | 1218 | CG12708-RA | 568..1215 | 666..19 | 3240 | 100 | Minus |
CG15646-PA | 1233 | CG15646-RA | 742..1049 | 549..242 | 1415 | 98.3 | Minus |
CG15646-PA | 1233 | CG15646-RA | 619..752 | 666..533 | 670 | 100 | Minus |
CG15646-PA | 1233 | CG15646-RA | 1071..1124 | 229..176 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 939..1586 | 666..19 | 3240 | 100 | Minus |
CG12708-RA | 1586 | CG12708-RA | 823..1470 | 666..19 | 3240 | 100 | Minus |
CG15646-RB | 1697 | CG15646-RB | 906..1411 | 666..176 | 2065 | 94.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676974..15677621 | 666..19 | 3240 | 100 | Minus |
X | 23542271 | X | 15668171..15668676 | 176..666 | 1975 | 94.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 646..547 | 148 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 646..547 | 141 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6851 | 646..550 | 139 | 67.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 646..561 | 139 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 647..581 | 134 | 68.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 666..565 | 134 | 66.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 666..606 | 120 | 71.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2416 | 666..581 | 113 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 637..536 | 113 | 59.2 | Minus |
MXO02381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:00 Download gff for
MXO02381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 568..1218 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:41 Download gff for
MXO02381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 798..1448 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:15 Download gff for
MXO02381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 823..1473 | 15..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:15 Download gff for
MXO02381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676974..15677624 | 15..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:41 Download gff for
MXO02381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15571007..15571657 | 15..666 | 99 | | Minus |
MXO02381.5prime Sequence
776 bp (667 high quality bases) assembled on 2007-01-19
> MXO02381.5prime
CAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCTCGTACTTG
GCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGCTCCAGCTA
CAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTCGATCGGAG
TGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGCCGGCCAGC
TCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTCAGCAACAT
CCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGGGGCAACTG
GAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGCCCACCTTC
GAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCCCTGATCGC
CCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCCGCGTTACC
TGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCACCTCCGACC
GGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTGACCCTGGA
GCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCTGCCCAACG
CCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGCAGCATCTC
CGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGCCACGGACA
CNGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCCCGCCTTCG
ATCCGGCCAGCGATCTGTGCGAGTAC
MXO02381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PA | 1218 | CG12708-RA | 1..768 | 9..776 | 3821 | 99.8 | Plus |
CG15646-PA | 1233 | CG15646-RA | 127..752 | 90..709 | 2746 | 97.2 | Plus |
CG15646-PA | 1233 | CG15646-RA | 742..825 | 693..776 | 351 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 372..1139 | 9..776 | 3829 | 99.9 | Plus |
CG12708-RA | 1586 | CG12708-RA | 256..1023 | 9..776 | 3829 | 99.9 | Plus |
CG15646-RB | 1697 | CG15646-RB | 414..1112 | 90..776 | 3119 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676407..15677174 | 9..776 | 3829 | 99.9 | Plus |
X | 23542271 | X | 15668470..15669168 | 776..90 | 3069 | 96.6 | Minus |
Blast to na_te.dros performed 2014-11-28 20:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 596..695 | 148 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 562..692 | 146 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 596..695 | 141 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 596..681 | 139 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 595..661 | 134 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 576..677 | 134 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 553..661 | 120 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 576..636 | 120 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 605..706 | 115 | 59.2 | Plus |
MXO02381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:00 Download gff for
MXO02381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 1..768 | 9..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:06 Download gff for
MXO02381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 226..998 | 2..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:44 Download gff for
MXO02381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 251..1023 | 2..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:44 Download gff for
MXO02381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676402..15677174 | 2..776 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:06 Download gff for
MXO02381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570435..15571207 | 2..776 | 99 | | Plus |