Clone MXO02381 Report

Search the DGRC for MXO02381

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:81
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG12708-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02381.3prime Sequence

666 bp (601 high quality bases) assembled on 2007-01-19

> MXO02381.3prime
ATGGTCTAGAAAGCTTGCGCTTTCTTCCACCAGGGAGAAGCTGAGGCGTC
TCTTCGTGGCGTCTCTGGCCTGCACTTGCAACCACATGGCATCCAGCTGA
CAGGCATCCTCCAGCTCCTCGCCACCCAACTCCAGTCCGCGACTCAGCTG
GCAGTGCTCCTCCTCCAGCTCGCAGTCGCTGGTGGAATTGTGCCCACTGT
CCGGACTGATGTGGCGCATCTTCTGGGCGGGAGCTGCTATGGATCCGGAC
CTGGCCGCTGCAAGCAGCTTCTGCGCCGACTGCCTGACGCTGGAGGAGAT
CTTTGTGGTGATCTTTCGCTTGCGCCGCACCACCCGCTGCCTGCGCAGCT
GCAGGGAATGCCGCTTGGCATCCTGCGATTCGGATACGGTGGGCACGGGG
GAGCGCACCTCCCGCTCCTCGAAGCCCTCCGCTGGCAGGGAATCCCTCCG
CGAGGGCGACTTCCAGTACTCGCACAGATCGCTGGCCGGATCGAAGGCGG
GGCGGTAGGTGGGCGATGGCGTCTGGGTGGGGCCGTGCCCGTGTCCGTGG
CTGCTCCGGAGCACCTGCTGCCTGAGCCTGTGCCGCTGGCGGAGATGCTG
CCTGGGCTGGCGGTGCTGATGCTGGTGCTGTTGCTGTCTGGCGTTGGGCA
GCACCTTGCGGTTGCT

MXO02381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PA 1218 CG12708-RA 568..1215 666..19 3240 100 Minus
CG15646-PA 1233 CG15646-RA 742..1049 549..242 1415 98.3 Minus
CG15646-PA 1233 CG15646-RA 619..752 666..533 670 100 Minus
CG15646-PA 1233 CG15646-RA 1071..1124 229..176 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 939..1586 666..19 3240 100 Minus
CG12708-RA 1586 CG12708-RA 823..1470 666..19 3240 100 Minus
CG15646-RB 1697 CG15646-RB 906..1411 666..176 2065 94.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676974..15677621 666..19 3240 100 Minus
X 23542271 X 15668171..15668676 176..666 1975 94.1 Plus
Blast to na_te.dros performed 2014-11-28 19:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 646..547 148 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 646..547 141 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6851 646..550 139 67.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 646..561 139 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 647..581 134 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 666..565 134 66.1 Minus
roo 9092 roo DM_ROO 9092bp 1098..1160 666..606 120 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2416 666..581 113 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 637..536 113 59.2 Minus

MXO02381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:00 Download gff for MXO02381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 568..1218 15..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:41 Download gff for MXO02381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 798..1448 15..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:15 Download gff for MXO02381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 823..1473 15..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:15 Download gff for MXO02381.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15676974..15677624 15..666 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:41 Download gff for MXO02381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15571007..15571657 15..666 99   Minus

MXO02381.5prime Sequence

776 bp (667 high quality bases) assembled on 2007-01-19

> MXO02381.5prime
CAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCTCGTACTTG
GCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGCTCCAGCTA
CAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTCGATCGGAG
TGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGCCGGCCAGC
TCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTCAGCAACAT
CCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGGGGCAACTG
GAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGCCCACCTTC
GAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCCCTGATCGC
CCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCCGCGTTACC
TGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCACCTCCGACC
GGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTGACCCTGGA
GCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCTGCCCAACG
CCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGCAGCATCTC
CGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGCCACGGACA
CNGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCCCGCCTTCG
ATCCGGCCAGCGATCTGTGCGAGTAC

MXO02381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PA 1218 CG12708-RA 1..768 9..776 3821 99.8 Plus
CG15646-PA 1233 CG15646-RA 127..752 90..709 2746 97.2 Plus
CG15646-PA 1233 CG15646-RA 742..825 693..776 351 96.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 372..1139 9..776 3829 99.9 Plus
CG12708-RA 1586 CG12708-RA 256..1023 9..776 3829 99.9 Plus
CG15646-RB 1697 CG15646-RB 414..1112 90..776 3119 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676407..15677174 9..776 3829 99.9 Plus
X 23542271 X 15668470..15669168 776..90 3069 96.6 Minus
Blast to na_te.dros performed 2014-11-28 20:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 596..695 148 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 562..692 146 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 596..695 141 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 596..681 139 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 595..661 134 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 576..677 134 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 553..661 120 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1098..1160 576..636 120 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 605..706 115 59.2 Plus

MXO02381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:00 Download gff for MXO02381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 1..768 9..776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:06 Download gff for MXO02381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 226..998 2..776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:44 Download gff for MXO02381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 251..1023 2..776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:44 Download gff for MXO02381.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15676402..15677174 2..776 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:06 Download gff for MXO02381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570435..15571207 2..776 99   Plus