Clone MXO02382 Report

Search the DGRC for MXO02382

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:82
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptmRpL16-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02382.3prime Sequence

754 bp (747 high quality bases) assembled on 2007-01-19

> MXO02382.3prime
ATGGTCTAGAAAGCTTGCCAGGTGCTTGCCGAACCACTTGTGGTCCACGG
GCGAGAGCCAACGGTGGCAGCCGCTGAGGTTGTTCTGGATCACGTACTTC
ATGGTAAAGGGGTTCTCATTCTGGCGGGTCTGTTCCTCCTCGGCGACGCG
CTGTTCGTCGAGCATCTCCTGGGAAACGACGGTGGCCTGGAAGGGCAGCT
GGTTGGCCACCTGCTGCAGGAACTGCTTGACCTCAACGAACTCGCACTTG
CCGGCTATCTCGACAATGACGCGACCGGCCTTGATGGGGGTCACGTAGTG
GTCGATGGCTCCCTTTCCGCCGCCCATCCGTTGGCCCTGGCCCTTCTTAG
TGATCGGCTGCCAGGGTGCGGGAACGCGCCATGTGGCGAACATAGTGTTG
ACGTTCATCTTGCGTCCGATGGTCAAACGCATCATTTCGTAGTGGCCCCA
GCGCAGGCGCCCTCCGCCAGTGGCCACGATTGCGTACTGCTTATGGAGCA
GCGTGTTGTGCACCATCTCCGGACCGCGCATGTATCGCAGGCGCTTCTGC
ATCTTTGGCGGACGGATGTTTGGCGGCAGCTGGGGCTGGCGCTCAATGAC
CCTCAGCTTGGGTCTCTCCGGCTGCTCCACATTCTGGTATTTAATAGGCG
GAGCGAAATACTTAAGACCGGCTGTGTTGACAATTGCCATGTTGCCCGAC
GCAAGGCTTTGCTTAAAGAGCTGGGAGACTAACTTTAATGAGAGCATGTC
CGAC

MXO02382.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3109-PA 732 mRpL16-RA 1..729 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..820 748..19 3650 100 Minus
mRpL16-RA 869 CG3109-RA 91..820 748..19 3650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891226 632..19 3070 100 Minus
X 23542271 X 1890478..1890543 698..633 330 100 Minus
X 23542271 X 1890346..1890395 748..699 250 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:16:34 has no hits.

MXO02382.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:01 Download gff for MXO02382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 18..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:39 Download gff for MXO02382.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 86..820 19..754 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:06 Download gff for MXO02382.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 86..820 19..754 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:06 Download gff for MXO02382.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1890341..1890395 699..754 92 -> Minus
X 1890478..1890543 633..698 100 -> Minus
X 1890613..1891226 19..632 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:39 Download gff for MXO02382.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784374..1784428 699..754 92 -> Minus
arm_X 1784511..1784576 633..698 100 -> Minus
arm_X 1784646..1785259 19..632 100   Minus

MXO02382.5prime Sequence

635 bp (608 high quality bases) assembled on 2007-01-19

> MXO02382.5prime
CAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTAAGCAAAGC
CTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTTAAGTATTT
CGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAGACCCAAGC
TGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCCGTCCGCCA
AAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATGGTGCACAA
CACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGGAGGGCGCC
TGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGACGCAAGATG
AACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCCTGGCAGCC
GATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAAGGGAGCCA
TCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTGTCGAGATA
GCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAGCAGGTGGC
CAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGATGCTCGACG
AACAGCGCGTCCCAGAGGACAACCGCCAATGAAAC

MXO02382.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3109-PA 732 mRpL16-RA 1..603 9..611 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..702 8..619 3030 99.7 Plus
mRpL16-RA 869 CG3109-RA 91..702 8..619 3030 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891108 124..619 2450 99.6 Plus
X 23542271 X 1890478..1890543 58..123 330 100 Plus
X 23542271 X 1890346..1890395 8..57 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:26:36 has no hits.

MXO02382.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:01 Download gff for MXO02382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..616 9..623 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:53 Download gff for MXO02382.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 84..707 1..623 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:07 Download gff for MXO02382.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 84..707 1..623 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:07 Download gff for MXO02382.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1890339..1890395 1..57 92 -> Plus
X 1890478..1890543 58..123 100 -> Plus
X 1890613..1891113 124..623 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:53 Download gff for MXO02382.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784372..1784428 1..57 92 -> Plus
arm_X 1784511..1784576 58..123 100 -> Plus
arm_X 1784646..1785146 124..623 99   Plus