MXO02383.3prime Sequence
271 bp (270 high quality bases) assembled on 2007-01-19
> MXO02383.3prime
ATGGTCTAGAAAGCTTGCGAATTCGAGACTACCGCTTATCTTATAGAACT
CATCCTCGGAGCGCGAATTCAATACGCACAGATGTACAGCCTGGCACTGG
GCTACTCCGAAATCGAAGTCTCCAAAGCGCTTGAGGATCTCGCGAGCGTC
AAAGCTGTTACCAGATTTATTTGCCTTATTGCGGTAGCGGTTGTTCATCA
CCGTCATGTGCAGTTTAATGGATTCACGTTCAATATTGTCTGTAGCGCAC
AGTGCTGTAGTCTGAAAGTGG
MXO02383.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12129-PA | 1059 | CG12129-RA | 804..1056 | 271..19 | 1265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12129-RA | 1239 | CG12129-RA | 901..1153 | 271..19 | 1265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10034360..10034612 | 271..19 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:53 has no hits.
MXO02383.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:01 Download gff for
MXO02383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-PA | 804..1059 | 15..271 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:08 Download gff for
MXO02383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-RA | 901..1157 | 14..271 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:47 Download gff for
MXO02383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-RA | 901..1157 | 14..271 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:47 Download gff for
MXO02383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10034360..10034616 | 14..271 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:08 Download gff for
MXO02383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5921865..5922121 | 14..271 | 99 | | Minus |
MXO02383.5prime Sequence
733 bp (588 high quality bases) assembled on 2007-01-19
> MXO02383.5prime
CAGTCGACATGAGCCGCGAAGTGTTACCCCCTCCTGTCCAAAAGATGAGC
CAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTCGGTGGCGA
CAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAAAGCCTACG
AAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACGATGCGGTT
GTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTTTCCATTCA
TGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGGATCTACGA
AGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTCCGCGTCCG
AACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGCAGTCAAGT
ATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTTACGAAAAA
AAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTGGAGAAGTC
AAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCCGAGTTGCC
AGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCATCTTACCT
TAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAGCCCTGAAG
AATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAACATACCTTTCCA
AATTAAAGTTAAGGGCCTGGAGATTATGAACGA
MXO02383.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12129-PA | 1059 | CG12129-RA | 1..725 | 9..733 | 3550 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12129-RA | 1239 | CG12129-RA | 97..822 | 8..733 | 3585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10033757..10034021 | 260..524 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 10034071..10034281 | 523..733 | 1040 | 99.5 | Plus |
| 2R | 25286936 | 2R | 10033400..10033551 | 8..159 | 730 | 98.7 | Plus |
| 2R | 25286936 | 2R | 10033603..10033703 | 159..259 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:18 has no hits.
MXO02383.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:02 Download gff for
MXO02383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-PA | 1..724 | 9..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:25 Download gff for
MXO02383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-RA | 91..821 | 1..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:31 Download gff for
MXO02383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-RA | 91..821 | 1..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:31 Download gff for
MXO02383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10033394..10033551 | 1..159 | 96 | -> | Plus |
| 2R | 10033604..10033703 | 160..259 | 100 | -> | Plus |
| 2R | 10033757..10034021 | 260..524 | 100 | -> | Plus |
| 2R | 10034073..10034280 | 525..732 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:25 Download gff for
MXO02383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5920899..5921056 | 1..159 | 96 | -> | Plus |
| arm_2R | 5921109..5921208 | 160..259 | 100 | -> | Plus |
| arm_2R | 5921262..5921526 | 260..524 | 100 | -> | Plus |
| arm_2R | 5921578..5921785 | 525..732 | 99 | | Plus |
