MXO02384.3prime Sequence
447 bp (447 high quality bases) assembled on 2007-01-19
> MXO02384.3prime
ATGGTCTAGAAAGCTTGCGTAGGCCTGCGACAGAATGACGTTGCCCTTCC
GCTGCGGATCCTGCACCGTTTCCTCCTTTTTGCCGATCAGCGACTTGTGT
ATGTGCGGAATGACACCGCCACCAGCGATGGTTGCCTTGATCAGGCTGTC
CAGCTCCTCGTCTCCGCGAATGGCGAGCTGTAAGTGGCGAGGAGTGATAC
GTTTCACTTTCAAGTCCTTCGATGCGTTGCCTGCCAACTCCAGGACCTCG
GCGGTCAGGTATTCCAATATGGCAGCGGAGTACACGGCTGCAGTGGCTCC
GACGCGTCCATGTGACGTAGTGCGGCTCTTGAGATGACGATGGATGCGAC
CCACGGGGAACTGAAGACCCGCGCGCGCGGAACGCGATACCGCCTTCGCC
TTGGCCTTGCCCGAATCCTTGCCTGCTTTACCGCCAGCCATGTCGAC
MXO02384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5499-PA | 426 | His2Av-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| His2Av-RB | 1169 | CG5499-RB | 165..587 | 441..19 | 2115 | 100 | Minus |
| His2Av-RA | 912 | CG5499-RA | 165..587 | 441..19 | 2115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26868354..26868583 | 248..19 | 1150 | 100 | Minus |
| 3R | 32079331 | 3R | 26867666..26867784 | 363..245 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 26867408..26867486 | 439..361 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:23 has no hits.
MXO02384.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:02 Download gff for
MXO02384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5499-PA | 1..426 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:24 Download gff for
MXO02384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| His2Av-RA | 157..592 | 13..447 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:07 Download gff for
MXO02384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| His2Av-RA | 157..592 | 13..447 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:07 Download gff for
MXO02384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26867402..26867486 | 361..447 | 96 | -> | Minus |
| 3R | 26867669..26867782 | 247..360 | 100 | -> | Minus |
| 3R | 26868356..26868588 | 13..246 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:24 Download gff for
MXO02384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22693124..22693208 | 361..447 | 96 | -> | Minus |
| arm_3R | 22693391..22693504 | 247..360 | 100 | -> | Minus |
| arm_3R | 22694078..22694310 | 13..246 | 99 | | Minus |
MXO02384.5prime Sequence
447 bp (447 high quality bases) assembled on 2007-01-19
> MXO02384.5prime
CAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCAAGGCCAAG
GCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTCCCCGTGGG
TCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGGACGCGTCG
GAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACCTGACCGCC
GAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAAGTGAAACG
TATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGAGGAGCTGG
ACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTCCGCACATA
CACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCATGATCCGCAGCG
GAAGGGCAACGTCATTCTGTCGCAGGCCTACGCAAGCTTTCTAGACC
MXO02384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5499-PA | 426 | His2Av-RA | 1..423 | 9..431 | 2090 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| His2Av-RB | 1169 | CG5499-RB | 165..587 | 9..431 | 2100 | 99.8 | Plus |
| His2Av-RA | 912 | CG5499-RA | 165..587 | 9..431 | 2100 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26868354..26868583 | 202..431 | 1135 | 99.6 | Plus |
| 3R | 32079331 | 3R | 26867666..26867784 | 87..205 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 26867408..26867486 | 11..89 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:48 has no hits.
MXO02384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:02 Download gff for
MXO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5499-PA | 1..426 | 9..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:48 Download gff for
MXO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| His2Av-RA | 160..592 | 1..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:33 Download gff for
MXO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| His2Av-RA | 160..592 | 1..437 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:33 Download gff for
MXO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26867399..26867486 | 1..89 | 95 | -> | Plus |
| 3R | 26867669..26867782 | 90..203 | 100 | -> | Plus |
| 3R | 26868356..26868588 | 204..437 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:48 Download gff for
MXO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22693121..22693208 | 1..89 | 95 | -> | Plus |
| arm_3R | 22693391..22693504 | 90..203 | 100 | -> | Plus |
| arm_3R | 22694078..22694310 | 204..437 | 98 | | Plus |
