Clone Sequence Records
MXO02390.3prime Sequence
564 bp (530 high quality bases) assembled on 2007-01-19
> MXO02390.3prime
ATGGTCTAGAAAGCTTGCGGGCTTGCTGTCGAAGCCAGCGAAATCCGACG
CCTCCGACTCATCGTCATCCCTCTCGACGCCGATGCAATGGATTCCAGTC
CGCAGCATAGGAGTACCCTTGCCCTTGCCCAACACCCGAGCGGCTATGAC
CAGCTGTAGCAGCTCCTTGGCGTTCGATGAGCTGACAATGTGCAGGACCT
CGCGCAACAGCTTCTCCTTGTAGGCAAAGAACTCGATTTTCATTTCGAAA
AAGTCGTGCTCATCATGCTTGGTGCCCTCGAACTCCGTGATCCTGCAGTG
CAAGCTCGGCGTGGCGCTAATCACCGGCTCAAATTTGCTGGCCAGCGTCT
TGGCATCGCCGAATAGCGACGTCGGCAGCTTCAGTCCGACCCGATAGCGA
TGCCTGATCTGCAGAAAGCCAAGGCTCACCACAATCGTGTCACCAGACCT
TTGGTATGTCACACAGCTGTCCGATTCGAAGTCATCCTTCACCGTGTTCG
TGTCGAAGTGCACATGGTGGTCTTGATGCTCCACATTTTCAATGGACTCG
TCGCACATGTCGAC
MXO02390.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-PA | 543 | CG6983-RA | 1..540 | 558..19 | 2600 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-RB | 1740 | CG6983-RB | 193..732 | 558..19 | 2640 | 99.3 | Minus |
| CG6983-RA | 1302 | CG6983-RA | 193..732 | 558..19 | 2640 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8444050..8444557 | 19..526 | 2480 | 99.2 | Plus |
| 3L | 28110227 | 3L | 8449149..8449185 | 522..558 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:49 has no hits.
MXO02390.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:05 Download gff for
MXO02390.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-PA | 1..543 | 15..558 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:36 Download gff for
MXO02390.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 187..736 | 14..564 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:07 Download gff for
MXO02390.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 187..736 | 14..564 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:07 Download gff for
MXO02390.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8444046..8444552 | 14..521 | 98 | <- | Plus |
| 3L | 8449149..8449190 | 522..564 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:36 Download gff for
MXO02390.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8437146..8437652 | 14..521 | 98 | <- | Plus |
| arm_3L | 8442249..8442290 | 522..564 | 93 | | Plus |
MXO02390.5prime Sequence
564 bp (564 high quality bases) assembled on 2007-01-19
> MXO02390.5prime
CAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATCAAGACCAC
CATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAATCGGACAG
CTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAGCCTGGGCT
TTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGCCGACGTCG
CTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCGGTGATTAG
CGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGGCACCAAGC
ATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTGCCTACAAG
GAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCGAACGCCAA
GGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAAGGGCAAGG
GTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCGAGAGGGAT
GACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGCAAGCCCGC
AAGCTTTCTAGACC
MXO02390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-PA | 543 | CG6983-RA | 1..540 | 9..548 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-RB | 1740 | CG6983-RB | 193..732 | 9..548 | 2700 | 100 | Plus |
| CG6983-RA | 1302 | CG6983-RA | 193..732 | 9..548 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8444050..8444557 | 548..41 | 2540 | 100 | Minus |
| 3L | 28110227 | 3L | 8449149..8449185 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:54 has no hits.
MXO02390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:06 Download gff for
MXO02390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-PA | 1..543 | 9..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:50 Download gff for
MXO02390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 186..736 | 1..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:34 Download gff for
MXO02390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 186..736 | 1..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:34 Download gff for
MXO02390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8444046..8444552 | 46..553 | 99 | <- | Minus |
| 3L | 8449149..8449191 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:50 Download gff for
MXO02390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8437146..8437652 | 46..553 | 99 | <- | Minus |
| arm_3L | 8442249..8442291 | 1..45 | 91 | | Minus |
