MXO02391.3prime Sequence
511 bp (470 high quality bases) assembled on 2007-01-19
> MXO02391.3prime
ATGGTCTAGAAAGCTTGCGGGGATGCTGGCCAAGTAGTCCTTGATTGAGG
CGGGGTCCAGACGCTGGAATCCGTTCTGATCGCAGATTCCGATCTCAATG
TTGTCGGCAGTCATTTTTCCCTCAAAACCTTCTTTCAGCGTAAGGATGGC
GGTGTGAACAGCGTCGTCCAGCTCCAGATCTTCGCTGTAGCGCTTCTCCA
GGAAAGTTTTGCCGTTCACTGCGTTCTTGCCCATGGCAGTGGCCTTCCAG
GCGAAGTAGGCGCCCGAAGGATCGGATTGGTAGAGATACGGACGATCATT
GTCCCAGCCGCAGATCAGTAGGGAAACGCCAAAGGGACGAACGCCACCGG
ACTGAGTGTACTCCTGCATGAGCGTGGCCACTCCCTCCCCCCCCTGTGAC
ACTGGAATCGGCTCCATGAAGGACAGGTAGTACGTCTGGGCGATCTTGCG
GGCCTGCTTGACCAGCACGCGGTACTCCGGACCCATTCCAGAGCACACCA
TGCCGATGTGG
MXO02391.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5266-PA | 705 | Pros25-RA | 340..702 | 381..19 | 1815 | 100 | Minus |
CG5266-PA | 705 | Pros25-RA | 210..327 | 511..394 | 415 | 94 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 330..822 | 511..19 | 2270 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12432286..12432458 | 191..19 | 865 | 100 | Minus |
3R | 32079331 | 3R | 12432066..12432222 | 347..191 | 785 | 100 | Minus |
3R | 32079331 | 3R | 12431837..12432001 | 511..347 | 630 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:34:19 has no hits.
MXO02391.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:06 Download gff for
MXO02391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 210..705 | 15..511 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:40 Download gff for
MXO02391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 330..829 | 11..511 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:49 Download gff for
MXO02391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 330..829 | 11..511 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:49 Download gff for
MXO02391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431837..12432001 | 347..511 | 92 | -> | Minus |
3R | 12432067..12432222 | 191..346 | 100 | -> | Minus |
3R | 12432287..12432465 | 11..190 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:40 Download gff for
MXO02391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257559..8257723 | 347..511 | 92 | -> | Minus |
arm_3R | 8257789..8257944 | 191..346 | 100 | -> | Minus |
arm_3R | 8258009..8258187 | 11..190 | 98 | | Minus |
MXO02391.5prime Sequence
688 bp (687 high quality bases) assembled on 2007-01-19
> MXO02391.5prime
CAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCACGTTCAGT
CCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCCGTATCTGG
CGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGTCATTGCCA
CAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTGTACATCGC
GTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGAATGGGTCC
GGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCAGACGTACT
ACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGCAGCGCGTG
GCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGTCCCTTTGG
CGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTATCTCTACC
AATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTGCCATGGGC
AAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTACAGCGAAGA
TCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCTGAAAGAAG
GTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAATCTGCGAT
CAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAA
MXO02391.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5266-PA | 705 | Pros25-RA | 1..680 | 9..688 | 3400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..800 | 9..688 | 3400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 124..382 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 12432066..12432222 | 382..538 | 785 | 100 | Plus |
3R | 32079331 | 3R | 12432286..12432436 | 538..688 | 755 | 100 | Plus |
3R | 32079331 | 3R | 12431581..12431660 | 47..126 | 400 | 100 | Plus |
3R | 32079331 | 3R | 12431441..12431481 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:34 has no hits.
MXO02391.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:06 Download gff for
MXO02391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..678 | 9..686 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:29 Download gff for
MXO02391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..798 | 1..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:13 Download gff for
MXO02391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..798 | 1..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:13 Download gff for
MXO02391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431746..12432001 | 127..382 | 100 | -> | Plus |
3R | 12432067..12432222 | 383..538 | 100 | -> | Plus |
3R | 12432287..12432434 | 539..686 | 100 | | Plus |
3R | 12431433..12431481 | 1..49 | 91 | -> | Plus |
3R | 12431584..12431660 | 50..126 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:29 Download gff for
MXO02391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257468..8257723 | 127..382 | 100 | -> | Plus |
arm_3R | 8257789..8257944 | 383..538 | 100 | -> | Plus |
arm_3R | 8258009..8258156 | 539..686 | 100 | | Plus |
arm_3R | 8257155..8257203 | 1..49 | 91 | -> | Plus |
arm_3R | 8257306..8257382 | 50..126 | 100 | -> | Plus |