Clone MXO02391 Report

Search the DGRC for MXO02391

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:91
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPros25-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02391.3prime Sequence

511 bp (470 high quality bases) assembled on 2007-01-19

> MXO02391.3prime
ATGGTCTAGAAAGCTTGCGGGGATGCTGGCCAAGTAGTCCTTGATTGAGG
CGGGGTCCAGACGCTGGAATCCGTTCTGATCGCAGATTCCGATCTCAATG
TTGTCGGCAGTCATTTTTCCCTCAAAACCTTCTTTCAGCGTAAGGATGGC
GGTGTGAACAGCGTCGTCCAGCTCCAGATCTTCGCTGTAGCGCTTCTCCA
GGAAAGTTTTGCCGTTCACTGCGTTCTTGCCCATGGCAGTGGCCTTCCAG
GCGAAGTAGGCGCCCGAAGGATCGGATTGGTAGAGATACGGACGATCATT
GTCCCAGCCGCAGATCAGTAGGGAAACGCCAAAGGGACGAACGCCACCGG
ACTGAGTGTACTCCTGCATGAGCGTGGCCACTCCCTCCCCCCCCTGTGAC
ACTGGAATCGGCTCCATGAAGGACAGGTAGTACGTCTGGGCGATCTTGCG
GGCCTGCTTGACCAGCACGCGGTACTCCGGACCCATTCCAGAGCACACCA
TGCCGATGTGG

MXO02391.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5266-PA 705 Pros25-RA 340..702 381..19 1815 100 Minus
CG5266-PA 705 Pros25-RA 210..327 511..394 415 94 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha2-RA 920 CG5266-RA 330..822 511..19 2270 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12432286..12432458 191..19 865 100 Minus
3R 32079331 3R 12432066..12432222 347..191 785 100 Minus
3R 32079331 3R 12431837..12432001 511..347 630 92.1 Minus
Blast to na_te.dros performed on 2014-11-28 21:34:19 has no hits.

MXO02391.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:06 Download gff for MXO02391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5266-PA 210..705 15..511 96   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:40 Download gff for MXO02391.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 330..829 11..511 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:49 Download gff for MXO02391.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 330..829 11..511 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:49 Download gff for MXO02391.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12431837..12432001 347..511 92 -> Minus
3R 12432067..12432222 191..346 100 -> Minus
3R 12432287..12432465 11..190 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:40 Download gff for MXO02391.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8257559..8257723 347..511 92 -> Minus
arm_3R 8257789..8257944 191..346 100 -> Minus
arm_3R 8258009..8258187 11..190 98   Minus

MXO02391.5prime Sequence

688 bp (687 high quality bases) assembled on 2007-01-19

> MXO02391.5prime
CAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCACGTTCAGT
CCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCCGTATCTGG
CGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGTCATTGCCA
CAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTGTACATCGC
GTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGAATGGGTCC
GGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCAGACGTACT
ACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGCAGCGCGTG
GCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGTCCCTTTGG
CGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTATCTCTACC
AATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTGCCATGGGC
AAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTACAGCGAAGA
TCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCTGAAAGAAG
GTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAATCTGCGAT
CAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAA

MXO02391.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5266-PA 705 Pros25-RA 1..680 9..688 3400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha2-RA 920 CG5266-RA 121..800 9..688 3400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12431743..12432001 124..382 1295 100 Plus
3R 32079331 3R 12432066..12432222 382..538 785 100 Plus
3R 32079331 3R 12432286..12432436 538..688 755 100 Plus
3R 32079331 3R 12431581..12431660 47..126 400 100 Plus
3R 32079331 3R 12431441..12431481 9..49 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:47:34 has no hits.

MXO02391.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:06 Download gff for MXO02391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5266-PA 1..678 9..686 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:29 Download gff for MXO02391.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 113..798 1..686 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:13 Download gff for MXO02391.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 113..798 1..686 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:13 Download gff for MXO02391.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12431746..12432001 127..382 100 -> Plus
3R 12432067..12432222 383..538 100 -> Plus
3R 12432287..12432434 539..686 100   Plus
3R 12431433..12431481 1..49 91 -> Plus
3R 12431584..12431660 50..126 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:29 Download gff for MXO02391.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8257468..8257723 127..382 100 -> Plus
arm_3R 8257789..8257944 383..538 100 -> Plus
arm_3R 8258009..8258156 539..686 100   Plus
arm_3R 8257155..8257203 1..49 91 -> Plus
arm_3R 8257306..8257382 50..126 100 -> Plus