Clone MXO02392 Report

Search the DGRC for MXO02392

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:92
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptpex10-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02392.3prime Sequence

134 bp (132 high quality bases) assembled on 2007-01-19

> MXO02392.3prime
ATGGTCTAGAAAGCTTGCGGCATAGTTTTGCAGTAATATCACTTGGGACT
TTTTCAGCGACTCCCGGCACAAGGGGCACTCATCCCGCTCCTCCAGCCAC
TCGAGCAGGCAGCTCCAGCAAAAGATGTGGCCGC

MXO02392.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7864-PA 900 CG7864-RA 782..897 134..19 580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pex10-RB 1028 CG7864-RB 832..947 134..19 580 100 Minus
Pex10-RA 1487 CG7864-RA 1291..1406 134..19 580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1559667..1559782 134..19 580 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:20:46 has no hits.

MXO02392.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:07 Download gff for MXO02392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7864-PA 782..900 15..134 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:00 Download gff for MXO02392.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 1291..1413 11..134 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:48 Download gff for MXO02392.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 1291..1413 11..134 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:48 Download gff for MXO02392.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1559667..1559789 11..134 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:00 Download gff for MXO02392.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1559667..1559789 11..134 97   Minus

MXO02392.5prime Sequence

323 bp (319 high quality bases) assembled on 2007-01-19

> MXO02392.5prime
CAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGGAGATCGTG
AGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCCGAAGACTT
GTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAAGTACAACC
AGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCGCCTCGGCC
AATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATACAGGTGGA
CGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGATTGCCATTG
TCCTGGAGTTTGGTGGCGACTCC

MXO02392.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7864-PA 900 CG7864-RA 1..315 9..323 1550 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pex10-RB 1028 CG7864-RB 47..365 5..323 1580 99.7 Plus
Pex10-RA 1487 CG7864-RA 506..824 5..323 1580 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1558828..1559104 5..281 1370 99.6 Plus
3L 28110227 3L 1559158..1559200 281..323 215 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:33:02 has no hits.

MXO02392.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:07 Download gff for MXO02392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7864-PA 1..315 9..323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:41 Download gff for MXO02392.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 503..824 1..323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:12 Download gff for MXO02392.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 503..824 1..323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:12 Download gff for MXO02392.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1558825..1559104 1..281 98 -> Plus
3L 1559159..1559200 282..323 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:41 Download gff for MXO02392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1558825..1559104 1..281 98 -> Plus
arm_3L 1559159..1559200 282..323 100   Plus