Clone MXO02393 Report

Search the DGRC for MXO02393

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:93
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptwupA-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02393.3prime Sequence

648 bp (648 high quality bases) assembled on 2007-01-19

> MXO02393.3prime
ATGGTCTAGAAAGCTTGCAGCTTCGGCCTCAACCTCCTCCTTCACCTTGG
CATCTCCGGGCTTGCCCTTGGACCAGTCGGGTTTCTTCTCCTTCTCCTCC
TCCTCCAGCGTGAACTCCTTCTTCTTCACCACCTTGAGCTGGTTGCGGAA
GTTGAACTCAGCGGCCTTCTTCTGCAGCTTGGCGAATTTGTTTTCGTATT
TGGAGACCTTCTTCAGGGCTGGCTTGACGAACTTGCCGCGAAGATCGTTA
ACTTGGGCATTGAGATCGTTGATCTCTTGGGCCTTGACTTTCTGCACGTG
TTCTAAATCAAACTTATCGCCCTCCAAACTGTATACGCGTTGCCAATATT
GTTTGCATATTGTTTGCAGTTCGGCTTCGCTGGCATCGCTGAGATTCCTG
GGACTGCCGCAACGTTCTTCGATGATGCGTCTACGTTCAGCCGCTTTGCG
TTCCTGTTCTTTCTTCAGCTCCTCAGCGGCTTTCTTACGCAGCAGCAACC
TGAGTTTCTTCTTCCTCTCTGGGGTCATGAAACCCTTCTTGGCCTTCTTG
GCCTTGGAGGCTTCCTCCATGCGCTTGCGCACCTCAGCACGCTTGCGCTC
GATCTCAGCCTGTTTAGCCTTCTTAGCCTCATCATCAGCCATGTCGAC

MXO02393.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7178-PD 627 wupA-RD 1..624 642..19 3120 100 Minus
CG7178-PE 627 wupA-RE 1..624 642..19 3120 100 Minus
CG7178-PC 627 wupA-RC 1..279 642..364 1345 99.2 Minus
CG7178-PF 627 wupA-RF 1..279 642..364 1345 99.2 Minus
CG7178-PA 627 wupA-RA 1..268 642..375 1340 100 Minus
CG7178-PB 627 wupA-RB 1..268 642..375 1340 100 Minus
CG7178-PC 627 wupA-RC 367..624 276..19 1290 100 Minus
CG7178-PF 627 wupA-RF 367..624 276..19 1290 100 Minus
CG7178-PA 627 wupA-RA 367..624 276..19 1290 100 Minus
CG7178-PB 627 wupA-RB 367..624 276..19 1290 100 Minus
CG7178-PG 810 wupA-RG 550..807 276..19 1290 100 Minus
CG7178-PG 810 wupA-RG 196..462 630..364 1285 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 1129 CG7178-RE 110..733 642..19 3120 100 Minus
wupA-RD 1257 CG7178-RD 238..861 642..19 3120 100 Minus
wupA-RI 1029 CG7178-RI 141..697 642..86 2785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18106681..18106822 88..229 710 100 Plus
X 23542271 X 18113447..18113577 499..629 655 100 Plus
X 23542271 X 18113258..18113382 375..499 625 100 Plus
X 23542271 X 18110504..18110606 274..376 515 100 Plus
X 23542271 X 18105964..18106034 19..89 355 100 Plus
X 23542271 X 18106888..18106933 230..275 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:21:47 has no hits.

MXO02393.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:08 Download gff for MXO02393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7178-PE 1..627 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:22 Download gff for MXO02393.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 135..772 9..648 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:16 Download gff for MXO02393.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 232..869 9..648 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:16 Download gff for MXO02393.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18105956..18106032 9..87 94 <- Plus
X 18106681..18106822 88..229 100 <- Plus
X 18106888..18106931 230..273 100 <- Plus
X 18110504..18110604 274..374 100 <- Plus
X 18113258..18113381 375..498 100 <- Plus
X 18113447..18113575 499..627 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:22 Download gff for MXO02393.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18004537..18004637 274..374 100 <- Plus
arm_X 18007291..18007414 375..498 100 <- Plus
arm_X 17999989..18000065 9..87 94 <- Plus
arm_X 18000714..18000855 88..229 100 <- Plus
arm_X 18000921..18000964 230..273 100 <- Plus
arm_X 18007480..18007608 499..627 100 <- Plus

MXO02393.5prime Sequence

845 bp (787 high quality bases) assembled on 2007-01-19

> MXO02393.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCCGAGATCCTA
AAAATGCTAATGACACATCGATTTACATGTTCTATCAAAAAGTCG

MXO02393.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 06:04:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 21:34:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 21:34:28 has no hits.
Blast to na_te.dros performed on 2014-11-28 21:34:29 has no hits.

MXO02393.5prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:26:54 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:26:54 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:37:46 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:37:46 has no hits.