MXO02393.3prime Sequence
648 bp (648 high quality bases) assembled on 2007-01-19
> MXO02393.3prime
ATGGTCTAGAAAGCTTGCAGCTTCGGCCTCAACCTCCTCCTTCACCTTGG
CATCTCCGGGCTTGCCCTTGGACCAGTCGGGTTTCTTCTCCTTCTCCTCC
TCCTCCAGCGTGAACTCCTTCTTCTTCACCACCTTGAGCTGGTTGCGGAA
GTTGAACTCAGCGGCCTTCTTCTGCAGCTTGGCGAATTTGTTTTCGTATT
TGGAGACCTTCTTCAGGGCTGGCTTGACGAACTTGCCGCGAAGATCGTTA
ACTTGGGCATTGAGATCGTTGATCTCTTGGGCCTTGACTTTCTGCACGTG
TTCTAAATCAAACTTATCGCCCTCCAAACTGTATACGCGTTGCCAATATT
GTTTGCATATTGTTTGCAGTTCGGCTTCGCTGGCATCGCTGAGATTCCTG
GGACTGCCGCAACGTTCTTCGATGATGCGTCTACGTTCAGCCGCTTTGCG
TTCCTGTTCTTTCTTCAGCTCCTCAGCGGCTTTCTTACGCAGCAGCAACC
TGAGTTTCTTCTTCCTCTCTGGGGTCATGAAACCCTTCTTGGCCTTCTTG
GCCTTGGAGGCTTCCTCCATGCGCTTGCGCACCTCAGCACGCTTGCGCTC
GATCTCAGCCTGTTTAGCCTTCTTAGCCTCATCATCAGCCATGTCGAC
MXO02393.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7178-PD | 627 | wupA-RD | 1..624 | 642..19 | 3120 | 100 | Minus |
CG7178-PE | 627 | wupA-RE | 1..624 | 642..19 | 3120 | 100 | Minus |
CG7178-PC | 627 | wupA-RC | 1..279 | 642..364 | 1345 | 99.2 | Minus |
CG7178-PF | 627 | wupA-RF | 1..279 | 642..364 | 1345 | 99.2 | Minus |
CG7178-PA | 627 | wupA-RA | 1..268 | 642..375 | 1340 | 100 | Minus |
CG7178-PB | 627 | wupA-RB | 1..268 | 642..375 | 1340 | 100 | Minus |
CG7178-PC | 627 | wupA-RC | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PF | 627 | wupA-RF | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PA | 627 | wupA-RA | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PB | 627 | wupA-RB | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PG | 810 | wupA-RG | 550..807 | 276..19 | 1290 | 100 | Minus |
CG7178-PG | 810 | wupA-RG | 196..462 | 630..364 | 1285 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 1129 | CG7178-RE | 110..733 | 642..19 | 3120 | 100 | Minus |
wupA-RD | 1257 | CG7178-RD | 238..861 | 642..19 | 3120 | 100 | Minus |
wupA-RI | 1029 | CG7178-RI | 141..697 | 642..86 | 2785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18106681..18106822 | 88..229 | 710 | 100 | Plus |
X | 23542271 | X | 18113447..18113577 | 499..629 | 655 | 100 | Plus |
X | 23542271 | X | 18113258..18113382 | 375..499 | 625 | 100 | Plus |
X | 23542271 | X | 18110504..18110606 | 274..376 | 515 | 100 | Plus |
X | 23542271 | X | 18105964..18106034 | 19..89 | 355 | 100 | Plus |
X | 23542271 | X | 18106888..18106933 | 230..275 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:47 has no hits.
MXO02393.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:08 Download gff for
MXO02393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7178-PE | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:22 Download gff for
MXO02393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 135..772 | 9..648 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:16 Download gff for
MXO02393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 232..869 | 9..648 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:16 Download gff for
MXO02393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18105956..18106032 | 9..87 | 94 | <- | Plus |
X | 18106681..18106822 | 88..229 | 100 | <- | Plus |
X | 18106888..18106931 | 230..273 | 100 | <- | Plus |
X | 18110504..18110604 | 274..374 | 100 | <- | Plus |
X | 18113258..18113381 | 375..498 | 100 | <- | Plus |
X | 18113447..18113575 | 499..627 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:22 Download gff for
MXO02393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18004537..18004637 | 274..374 | 100 | <- | Plus |
arm_X | 18007291..18007414 | 375..498 | 100 | <- | Plus |
arm_X | 17999989..18000065 | 9..87 | 94 | <- | Plus |
arm_X | 18000714..18000855 | 88..229 | 100 | <- | Plus |
arm_X | 18000921..18000964 | 230..273 | 100 | <- | Plus |
arm_X | 18007480..18007608 | 499..627 | 100 | <- | Plus |
MXO02393.5prime Sequence
845 bp (787 high quality bases) assembled on 2007-01-19
> MXO02393.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCCGAGATCCTA
AAAATGCTAATGACACATCGATTTACATGTTCTATCAAAAAGTCG
MXO02393.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 06:04:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 21:34:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 21:34:28 has no hits.
Blast to na_te.dros performed on 2014-11-28 21:34:29 has no hits.
MXO02393.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:26:54 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:26:54 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:37:46 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:37:46 has no hits.