MXO02394.3prime Sequence
690 bp (590 high quality bases) assembled on 2007-01-19
> MXO02394.3prime
ATGGTCTAGAAAGCTTGCGAACTGGTTCGCGGGCAAATAATGATTGCCGA
TGGGACCGACGCCAGAGTTTCCGGCACAGTTCTCCGCAAATTGTCCCTCT
GAATGTTGCTGCTGTTGCTGTTCCTCCTCCTCCTCCTCTGGAGGATCCAG
GGATCCCACCACCGAGGTGATGGGGGCCACACCCTCGTCGGTGATGGTCG
AACTTCCTCCCAAAGTATCGTACTGTGACTGAATCTGCCGCTGGGCATTC
AGAGCTTCCTCTGGAGTGCGGTACTTGATGAAGAACACCTCCGGCTTATT
GATGTGCTGTGGCGCCTCGGCAATGGCATCCTGCAGATCGGAGGCGGTCG
TCTTCTTGGCCAGCACATAGACCACGGTCTTCTCCTGCTTAAGGGTCTTG
GCCAAGTTAAGAGCCGCCGCGCGATTGGTCTGAGCCGGCGTCTTGACGAA
CAGCACATTGTAGTGGTTACGGGGCTGCTGGGCCAACTGGTTCAGCTCGT
CCTGGACCTCATCCTCAGACTCCTCGGGCGCCGAGTGGATGAAAAAGTTT
TTGGTCACAATGGGACGCTTGGGAATCCTGACACGCGGACGAGCGCGTCG
CTGCTGCTGGATGGGAGCGGTCTGGAAATTGACGGGGAAGCCGGCGGGCA
ATGGGAAACGATCCGGCTGTGATACGAACTGCAGACTGGG
MXO02394.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4060-PA | 927 | CG4060-RA | 254..924 | 690..19 | 3220 | 99.2 | Minus |
CG32570-PA | 744 | CG32570-RA | 490..516 | 297..271 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlW-RA | 1126 | CG4060-RA | 346..1016 | 690..19 | 3275 | 99.3 | Minus |
TwdlQ-RA | 893 | CG14250-RA | 554..679 | 297..172 | 180 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17141318..17141988 | 19..690 | 3250 | 99.3 | Plus |
3R | 32079331 | 3R | 26692760..26692885 | 172..297 | 180 | 76.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6768 | 154..104 | 111 | 68.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6861 | 141..104 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2389 | 134..92 | 107 | 72.1 | Minus |
MXO02394.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:08 Download gff for
MXO02394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4060-PA | 254..927 | 15..690 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:10 Download gff for
MXO02394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlW-RA | 346..1026 | 8..690 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:51 Download gff for
MXO02394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlW-RA | 346..1026 | 8..690 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:51 Download gff for
MXO02394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17141308..17141988 | 8..690 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:10 Download gff for
MXO02394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12967030..12967710 | 8..690 | 98 | | Plus |
MXO02394.5prime Sequence
736 bp (729 high quality bases) assembled on 2007-01-19
> MXO02394.5prime
CAGTCGACATGAAGATATTTGTGACGGTTCTGATGGGCGCCATGTGCCTG
AGCCTCAGCCAGGCTGACATCAGCTTGACCCAGGCGGGTTACAACTACCG
CATCCAACAGCAGCAGCAGCAACAGCAACCGCCCATTGTGGCCCACCTGT
TGAACCAGCAACTGCAGCAGCAGCAGCAGCTCCAGCCCCAGCAATCCTCG
CACCCGGTGCTTCCACCTCTCCCACTGCCCTACCTCCCGCCCGCTGGCCA
GTTCCATTCTGCCCAGCCTGCAGTTCGTCCCACAGCCGGATCGTTTCCCA
TGCCCGCCGGCTTCCCCGTCAATTTCCAGACCGCTCCCATCCAGCAGCAG
CGACGCGCTCGTCCGCGTGTCAGGATTCCCAAGCGTCCCATTGTGACCAA
AAACTTTTTCATCCACTCGGCGCCCGAGGAGTCTGAGGATGAGGTCCAGG
ACGAGCTGAACCAGTTGGCCCAGCAGCCCCGTAACCACTACAATGTGCTG
TTCGTCAAGACGCCGGCTCAGACCAATCGCGCGGCGGCTCTTAACTTGGC
CAAGACCCTTAAGCAGGAGAAGACCGTGGTCTATGTGCTGGCCAAGAAGA
CGACCGCCTCCGATCTGCAGGATGCCATTGCCGAGGCGCCACAGCACATC
AATAAGCCGGAGGTGTTCTTCATCAAGTACCGCACTCCAGAGGAAGCTCT
GAATGCCCAGCGGCAGATTCAGTCACAGTACGAACT
MXO02394.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4060-PA | 927 | CG4060-RA | 1..725 | 9..733 | 3625 | 100 | Plus |
CG32570-PA | 744 | CG32570-RA | 490..516 | 654..680 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlW-RA | 1126 | CG4060-RA | 92..817 | 8..733 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17141517..17142227 | 733..23 | 3555 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6869 | 91..204 | 206 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6892 | 92..194 | 197 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6820 | 81..194 | 190 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6870 | 91..224 | 184 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2526 | 92..225 | 179 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2405 | 95..194 | 173 | 65 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1161 | 105..193 | 161 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2560 | 92..213 | 159 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2430 | 92..186 | 157 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2455 | 105..193 | 155 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2888 | 92..194 | 152 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6946 | 91..224 | 151 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6920 | 91..180 | 147 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2869 | 91..193 | 141 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2682 | 106..196 | 135 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6893 | 92..129 | 124 | 84.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 940..999 | 68..129 | 124 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1581 | 92..132 | 121 | 80.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1108..1148 | 88..129 | 117 | 78.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5636..5673 | 91..129 | 111 | 79.5 | Plus |
MXO02394.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:08 Download gff for
MXO02394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4060-PA | 1..729 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:44 Download gff for
MXO02394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlW-RA | 86..821 | 1..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:28 Download gff for
MXO02394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlW-RA | 86..821 | 1..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:28 Download gff for
MXO02394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17141513..17142226 | 24..736 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:44 Download gff for
MXO02394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12967235..12967948 | 24..736 | 99 | <- | Minus |