Clone MXO02394 Report

Search the DGRC for MXO02394

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:94
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTwdlW-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02394.3prime Sequence

690 bp (590 high quality bases) assembled on 2007-01-19

> MXO02394.3prime
ATGGTCTAGAAAGCTTGCGAACTGGTTCGCGGGCAAATAATGATTGCCGA
TGGGACCGACGCCAGAGTTTCCGGCACAGTTCTCCGCAAATTGTCCCTCT
GAATGTTGCTGCTGTTGCTGTTCCTCCTCCTCCTCCTCTGGAGGATCCAG
GGATCCCACCACCGAGGTGATGGGGGCCACACCCTCGTCGGTGATGGTCG
AACTTCCTCCCAAAGTATCGTACTGTGACTGAATCTGCCGCTGGGCATTC
AGAGCTTCCTCTGGAGTGCGGTACTTGATGAAGAACACCTCCGGCTTATT
GATGTGCTGTGGCGCCTCGGCAATGGCATCCTGCAGATCGGAGGCGGTCG
TCTTCTTGGCCAGCACATAGACCACGGTCTTCTCCTGCTTAAGGGTCTTG
GCCAAGTTAAGAGCCGCCGCGCGATTGGTCTGAGCCGGCGTCTTGACGAA
CAGCACATTGTAGTGGTTACGGGGCTGCTGGGCCAACTGGTTCAGCTCGT
CCTGGACCTCATCCTCAGACTCCTCGGGCGCCGAGTGGATGAAAAAGTTT
TTGGTCACAATGGGACGCTTGGGAATCCTGACACGCGGACGAGCGCGTCG
CTGCTGCTGGATGGGAGCGGTCTGGAAATTGACGGGGAAGCCGGCGGGCA
ATGGGAAACGATCCGGCTGTGATACGAACTGCAGACTGGG

MXO02394.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4060-PA 927 CG4060-RA 254..924 690..19 3220 99.2 Minus
CG32570-PA 744 CG32570-RA 490..516 297..271 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlW-RA 1126 CG4060-RA 346..1016 690..19 3275 99.3 Minus
TwdlQ-RA 893 CG14250-RA 554..679 297..172 180 77.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17141318..17141988 19..690 3250 99.3 Plus
3R 32079331 3R 26692760..26692885 172..297 180 76.2 Plus
Blast to na_te.dros performed 2014-11-28 20:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6768 154..104 111 68.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6861 141..104 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2389 134..92 107 72.1 Minus

MXO02394.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:08 Download gff for MXO02394.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4060-PA 254..927 15..690 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:10 Download gff for MXO02394.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlW-RA 346..1026 8..690 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:51 Download gff for MXO02394.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlW-RA 346..1026 8..690 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:51 Download gff for MXO02394.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17141308..17141988 8..690 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:10 Download gff for MXO02394.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12967030..12967710 8..690 98   Plus

MXO02394.5prime Sequence

736 bp (729 high quality bases) assembled on 2007-01-19

> MXO02394.5prime
CAGTCGACATGAAGATATTTGTGACGGTTCTGATGGGCGCCATGTGCCTG
AGCCTCAGCCAGGCTGACATCAGCTTGACCCAGGCGGGTTACAACTACCG
CATCCAACAGCAGCAGCAGCAACAGCAACCGCCCATTGTGGCCCACCTGT
TGAACCAGCAACTGCAGCAGCAGCAGCAGCTCCAGCCCCAGCAATCCTCG
CACCCGGTGCTTCCACCTCTCCCACTGCCCTACCTCCCGCCCGCTGGCCA
GTTCCATTCTGCCCAGCCTGCAGTTCGTCCCACAGCCGGATCGTTTCCCA
TGCCCGCCGGCTTCCCCGTCAATTTCCAGACCGCTCCCATCCAGCAGCAG
CGACGCGCTCGTCCGCGTGTCAGGATTCCCAAGCGTCCCATTGTGACCAA
AAACTTTTTCATCCACTCGGCGCCCGAGGAGTCTGAGGATGAGGTCCAGG
ACGAGCTGAACCAGTTGGCCCAGCAGCCCCGTAACCACTACAATGTGCTG
TTCGTCAAGACGCCGGCTCAGACCAATCGCGCGGCGGCTCTTAACTTGGC
CAAGACCCTTAAGCAGGAGAAGACCGTGGTCTATGTGCTGGCCAAGAAGA
CGACCGCCTCCGATCTGCAGGATGCCATTGCCGAGGCGCCACAGCACATC
AATAAGCCGGAGGTGTTCTTCATCAAGTACCGCACTCCAGAGGAAGCTCT
GAATGCCCAGCGGCAGATTCAGTCACAGTACGAACT

MXO02394.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4060-PA 927 CG4060-RA 1..725 9..733 3625 100 Plus
CG32570-PA 744 CG32570-RA 490..516 654..680 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlW-RA 1126 CG4060-RA 92..817 8..733 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17141517..17142227 733..23 3555 100 Minus
Blast to na_te.dros performed 2014-11-28 19:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6869 91..204 206 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6892 92..194 197 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6704..6820 81..194 190 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6870 91..224 184 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2526 92..225 179 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2405 95..194 173 65 Plus
roo 9092 roo DM_ROO 9092bp 1079..1161 105..193 161 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2560 92..213 159 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2430 92..186 157 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2455 105..193 155 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2888 92..194 152 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6808..6946 91..224 151 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6920 91..180 147 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2869 91..193 141 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2590..2682 106..196 135 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6857..6893 92..129 124 84.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 940..999 68..129 124 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1542..1581 92..132 121 80.5 Plus
roo 9092 roo DM_ROO 9092bp 1108..1148 88..129 117 78.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5636..5673 91..129 111 79.5 Plus

MXO02394.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:08 Download gff for MXO02394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4060-PA 1..729 9..736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:44 Download gff for MXO02394.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlW-RA 86..821 1..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:28 Download gff for MXO02394.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlW-RA 86..821 1..736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:28 Download gff for MXO02394.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17141513..17142226 24..736 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:44 Download gff for MXO02394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12967235..12967948 24..736 99 <- Minus