MXO02395.5prime Sequence
627 bp (627 high quality bases) assembled on 2007-01-19
> MXO02395.5prime
CAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCCACAAGGTC
ATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACACTGCAGTT
TATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGCCGATAGCT
ATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAGATATATTG
GATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAACTACTTTCG
CAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGACGAAAGCT
TCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGAAGAATGAT
GAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTGAATGATAA
GCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCAGTGGGCGG
TGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGGACAAGGTA
TTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAAGATTCGAA
AGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAGACTTAAGT
GTACCCTACTTGCAAGCTTTCTAGACC
MXO02395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2849-PA | 606 | Rala-RA | 1..603 | 9..611 | 3015 | 100 | Plus |
| CG2849-PC | 606 | Rala-RC | 1..603 | 9..611 | 3015 | 100 | Plus |
| CG2849-PB | 594 | Rala-RB | 1..496 | 9..504 | 2480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rala-RC | 2555 | CG2849-RC | 300..903 | 8..611 | 3020 | 100 | Plus |
| Rala-RA | 2377 | CG2849-RA | 496..1099 | 8..611 | 3020 | 100 | Plus |
| Rala-RB | 2057 | CG2849-RB | 300..801 | 8..509 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3708742..3708923 | 499..318 | 910 | 100 | Minus |
| X | 23542271 | X | 3709836..3709998 | 322..160 | 815 | 100 | Minus |
| X | 23542271 | X | 3710067..3710222 | 163..8 | 780 | 100 | Minus |
| X | 23542271 | X | 3707378..3707493 | 611..496 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:51 has no hits.
MXO02395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:09 Download gff for
MXO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2849-PC | 1..606 | 9..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:57 Download gff for
MXO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rala-RA | 489..1107 | 1..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:16 Download gff for
MXO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rala-RA | 489..1107 | 1..620 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:16 Download gff for
MXO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3710069..3710225 | 1..161 | 97 | | Minus |
| X | 3709836..3709996 | 162..322 | 100 | <- | Minus |
| X | 3707370..3707491 | 498..620 | 96 | <- | Minus |
| X | 3708744..3708918 | 323..497 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:57 Download gff for
MXO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3601403..3601524 | 498..620 | 96 | <- | Minus |
| arm_X | 3602777..3602951 | 323..497 | 100 | <- | Minus |
| arm_X | 3603869..3604029 | 162..322 | 100 | <- | Minus |
| arm_X | 3604102..3604258 | 1..161 | 97 | | Minus |
