Clone MXO02401 Report

Search the DGRC for MXO02401

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:1
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4415-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02401.3prime Sequence

839 bp (764 high quality bases) assembled on 2006-12-21

> MXO02401.3prime
ATGGTCTAGAAAGCTTGCACCCACAGTCAGGGCCATGATGGCATTGACCA
CATCGTTGTCGTTCTTCAGCAGCGCCTGGATCGCCTTTTTGCGCGAGCAC
GCGGCCTGCATCTGTACCAGTTCGATGTCCTTCGCATGTAGGCCCATGGC
ATCCGCGTCCTCGCCATCGTTCTCGTCGTCGTCGTCGTCGTGTGGGGACT
CCTCGCCAGGGGCTTTTCCATCCTCGTTACCTTGCCGCCCGGCAGGCGAG
GTTCCACGGAATCGCTCGGCCGCCTTGACAGCTGCCTGGGAGGCGACGGA
CGTGGTGCTAGTGTCCTCCACGCAGATCTCCCCAAAGAAGATGTACGTCG
ACGAGTGCGCCACTCTGTAGACGTCCGGCTGATCGATGTACAAGAGGATG
TTCTTGCCCTTCTTCATGGTCACTCGGGCCACGTTCTCCATGGGCTTCAG
GTCCAGCTTCATGAGGATCCGGCGTGCCTTCCGCTCGCCGCGAGACTGCT
TTGATACCTCACGTGTTCGCACGGCCACCGTACCGAGTTGACCCTGCTCG
TCCGGTTGGGTCTCCTTGGGATCCGCTTCCACGAGATCCGGGGCGTCATC
GGAGTCCGTGCTCTGATCATCCTCAACTACGCAGGATTTCGCGGCGGAGG
CGCCCTCCTCCTTCTGCGAGTTCGGCAGACTGAACACATTGGGCGGCAGC
TGTTTGGCCAGGCTCATCAGCTTCTTGATCTTGTTGCGGTAGGCCGGGTC
CATTTGACCCATGATGTGGGGCTTCCCCTTTGCGCCACTAAAGCCTGCCG
GAGGTTTATTCTTGACATCCAAAGCGTCTTCCGAACTGG

MXO02401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4415-PA 1044 CG4415-RA 221..1041 839..19 4080 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4415-RB 1288 CG4415-RB 354..1174 839..19 4090 99.9 Minus
CG4415-RA 1368 CG4415-RA 354..1174 839..19 4090 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1037599..1038419 839..19 4090 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 21:57:38 has no hits.

MXO02401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:35 Download gff for MXO02401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-PA 221..1044 15..839 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:09 Download gff for MXO02401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-PA 221..1044 15..839 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:50 Download gff for MXO02401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 354..1183 8..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:41 Download gff for MXO02401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 354..1183 8..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:41 Download gff for MXO02401.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1037599..1038428 8..839 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:50 Download gff for MXO02401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1037599..1038428 8..839 99   Minus

MXO02401.5prime Sequence

831 bp (812 high quality bases) assembled on 2006-12-21

> MXO02401.5prime
CAGTCGACATGGGTAAGAAGCAGAAAATGAAGAAGGCTGCCCAGATGGCG
ACCGCTGCCGAGAAATTGAAGACCGCTGCCGAGAAATCGAAGACCGCTGC
CGACAACGTGGTGGCCAAAGAAAAGCCTGCCGAAGAAGCCTCTCCCTCAC
CAAGTGGCAGTGGAAAAAAAGGGAAGCCCAAGGCAACGCAAAAACCAAAC
GTCGCAAAGGCACTTCAGAAGGAGATCTCCAGTTCGGAAGACGCCTTGGA
TGTCAAGAATAAACCTCCGGCAGGCTTTAGTGGCGCAAAGGGGAAGCCCC
ACATCATGGGTCAAATGGACCCGGCCTACCGCAACAAGATCAAGAAGCTG
ATGAGCCTGGCCAAACAGCTGCCGCCCAATGTGTTCAGTCTGCCGAACTC
GCAGAAGGAGGAGGGCGCCTCCGCCGCGAAATCCTGCGTAGTTGAGGATG
ATCAGAGCACGGACTCCGATGACGCCCCGGATCTCGTGGAAGCGGATCCC
AAGGAGACCCAACCGGACGAGCAGGGTCAACTCGGTACGGTGGCCGTGCG
AACACGTGAGGTATCAAAGCAGTCTCGCGGCGAGCGGAAGGCACGCCGGA
TCCTCATGAAGCTGGACCTGAAGCCCATGGAGAACGTGGCCCGAGTGACC
ATGAAGAAGGGCAAGAACATCCTCTTGTACATCGATCAGCCGGACGTCTA
CAGAGTGGCGCACTCGTCGACGTACATCTTCTTTGGGGAGATCTGCGTGG
AGGACACTAGCACCACGTCCGTCGCCTCCCAGGCAGCTGTCAAGGCGGCC
GAGCGATTCCGTGGAACCTCGCCTGCCGGGC

MXO02401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4415-PA 1044 CG4415-RA 1..823 9..831 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4415-RB 1288 CG4415-RB 134..956 9..831 4115 100 Plus
CG4415-RA 1368 CG4415-RA 134..956 9..831 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1037379..1038201 9..831 4115 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:47:57 has no hits.

MXO02401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:37 Download gff for MXO02401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-PA 1..823 9..831 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:10 Download gff for MXO02401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-PA 1..823 9..831 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:42 Download gff for MXO02401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 127..956 1..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:36 Download gff for MXO02401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 127..956 1..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:36 Download gff for MXO02401.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1037372..1038201 1..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:42 Download gff for MXO02401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1037372..1038201 1..831 99   Plus