Clone MXO02402 Report

Search the DGRC for MXO02402

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:2
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31388-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02402.3prime Sequence

872 bp (823 high quality bases) assembled on 2006-12-21

> MXO02402.3prime
ATGGTCTAGAAAGCTTGCATTCGTTGAACAATTTCTTCCACGGGAATTGG
GGGATGCAGCAGCTTTAGCACGCGCCTCCAGAGTTTTGTGGGCATTGGAC
TTCAGATGGGATCTGTAGTGTTTGGCTGTCTTGAAGCTTATGCGGCAGAT
TTCGCAGCCGTGATCGCGAGTCAAGTTGTGATACTTTTGATGTGTCCTGC
ACTCGCTGGGTGTTACATACGACTTGGGGCAGTACTCGCACTGGTAGATA
CGCTTGCTGGCGTCCATGTGAACCCTTTCATGCATGCTGCGGGCGCTGCA
AAAGCGAAAGGTTTTGCCACAGTTGTAGCGACAGATGTAGGGACGCTCGG
TTGTGTGGGTTTTCTGATGGGAACAGAGTTCGGCGGCTGTATAAAAGGAT
GCGCTGCACTGGTCGCATTTGTGGCGTCGTGTGCCCGCGTGGCGAACCAG
GTGATTCTTCAGATTAAAGGCCGTGGTCAGATGCTTGCCACATATGTGGC
ACACATGCTGGGACGCCGGCGGCCTGAGACACCGCTGTTTGTGAGTCTCC
AGCAGAATGTGATTGTGGAATTGGCTCTTGCACTTGGTGCAGGAGTGCGT
CAATGGAAGATTAATCATGTTGCAGTGCCGCGTAAGTGCGGCTGCTGATC
GGAAGCCCTCGTCACAGTGGTCACAGACGAATTTGGTATCTGGCGGGATG
TCGTGCAGATGGTATTTGTGCAGCTTCAGTTCGTCCACGTTTTCGAATTC
GAGGCCACACTTGCTGCACGTGTGGCTGGAGGAAGTGTCCCGATTATCGA
TAGCTTCACTTTCGGGTTCTGATTCGGGAGAGAGGCCCATGTCAAAGTGC
TCATTCGACAACTGGCTATCTG

MXO02402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 1341 CG31388-RA 485..1338 872..19 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 539..1392 872..19 4270 100 Minus
CG31388-RB 1562 CG31388-RB 818..1482 683..19 3325 100 Minus
CG31388-RB 1562 CG31388-RB 539..729 872..682 955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11239110..11239434 598..274 1625 100 Minus
3R 32079331 3R 11238420..11238609 872..683 950 100 Minus
3R 32079331 3R 11239895..11240034 158..19 700 100 Minus
3R 32079331 3R 11239509..11239627 276..158 595 100 Minus
3R 32079331 3R 11238957..11239041 682..598 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:11:49 has no hits.

MXO02402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:39 Download gff for MXO02402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 485..1341 16..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:10 Download gff for MXO02402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 485..1341 16..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:15 Download gff for MXO02402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 539..1398 11..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:53 Download gff for MXO02402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 539..1398 11..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:53 Download gff for MXO02402.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11238420..11238609 683..872 100 -> Minus
3R 11238957..11239041 598..682 100 -> Minus
3R 11239111..11239433 275..597 100 -> Minus
3R 11239511..11239627 158..274 100 -> Minus
3R 11239896..11240038 15..157 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:15 Download gff for MXO02402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7064679..7064763 598..682 100 -> Minus
arm_3R 7064142..7064331 683..872 100 -> Minus
arm_3R 7064833..7065155 275..597 100 -> Minus
arm_3R 7065233..7065349 158..274 100 -> Minus
arm_3R 7065618..7065760 15..157 98 -> Minus

MXO02402.5prime Sequence

822 bp (821 high quality bases) assembled on 2006-12-21

> MXO02402.5prime
CAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGGCTGATCCT
GCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTTTTGCGTCA
AATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAAGTTGCCCA
GGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCATCGATTTC
CGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAGCTAAGGCA
GGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCAATGGCTGG
ATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTACAGCTGAAT
GATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAGAATACGGA
TGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATATGAATGCAT
ACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAACAGATAGC
CAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAATCAGAACC
CGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCACACGTGCA
GCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGCTGCACAAA
TACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGTGACCACTG
TGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTGCAACATGA
TTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCCAATTCCAC
AATCACATTCTGCTGGAGACTC

MXO02402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 1341 CG31388-RA 1..814 9..822 4070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 54..868 8..822 4075 100 Plus
CG31388-RB 1562 CG31388-RB 54..729 8..683 3380 100 Plus
CG31388-RB 1562 CG31388-RB 818..958 682..822 705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11238047..11238609 120..682 2815 100 Plus
3R 32079331 3R 11237868..11237985 8..125 590 100 Plus
3R 32079331 3R 11238957..11239041 683..767 425 100 Plus
3R 32079331 3R 11239110..11239165 767..822 280 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:33 has no hits.

MXO02402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:41 Download gff for MXO02402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 1..814 9..822 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:11 Download gff for MXO02402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 1..814 9..822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:35 Download gff for MXO02402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 47..868 1..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:06 Download gff for MXO02402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 47..868 1..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:06 Download gff for MXO02402.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11237861..11237985 1..125 96 -> Plus
3R 11238053..11238609 126..682 100 -> Plus
3R 11238957..11239041 683..767 100 -> Plus
3R 11239111..11239165 768..822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:35 Download gff for MXO02402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7063583..7063707 1..125 96 -> Plus
arm_3R 7063775..7064331 126..682 100 -> Plus
arm_3R 7064679..7064763 683..767 100 -> Plus
arm_3R 7064833..7064887 768..822 100   Plus