MXO02402.3prime Sequence
872 bp (823 high quality bases) assembled on 2006-12-21
> MXO02402.3prime
ATGGTCTAGAAAGCTTGCATTCGTTGAACAATTTCTTCCACGGGAATTGG
GGGATGCAGCAGCTTTAGCACGCGCCTCCAGAGTTTTGTGGGCATTGGAC
TTCAGATGGGATCTGTAGTGTTTGGCTGTCTTGAAGCTTATGCGGCAGAT
TTCGCAGCCGTGATCGCGAGTCAAGTTGTGATACTTTTGATGTGTCCTGC
ACTCGCTGGGTGTTACATACGACTTGGGGCAGTACTCGCACTGGTAGATA
CGCTTGCTGGCGTCCATGTGAACCCTTTCATGCATGCTGCGGGCGCTGCA
AAAGCGAAAGGTTTTGCCACAGTTGTAGCGACAGATGTAGGGACGCTCGG
TTGTGTGGGTTTTCTGATGGGAACAGAGTTCGGCGGCTGTATAAAAGGAT
GCGCTGCACTGGTCGCATTTGTGGCGTCGTGTGCCCGCGTGGCGAACCAG
GTGATTCTTCAGATTAAAGGCCGTGGTCAGATGCTTGCCACATATGTGGC
ACACATGCTGGGACGCCGGCGGCCTGAGACACCGCTGTTTGTGAGTCTCC
AGCAGAATGTGATTGTGGAATTGGCTCTTGCACTTGGTGCAGGAGTGCGT
CAATGGAAGATTAATCATGTTGCAGTGCCGCGTAAGTGCGGCTGCTGATC
GGAAGCCCTCGTCACAGTGGTCACAGACGAATTTGGTATCTGGCGGGATG
TCGTGCAGATGGTATTTGTGCAGCTTCAGTTCGTCCACGTTTTCGAATTC
GAGGCCACACTTGCTGCACGTGTGGCTGGAGGAAGTGTCCCGATTATCGA
TAGCTTCACTTTCGGGTTCTGATTCGGGAGAGAGGCCCATGTCAAAGTGC
TCATTCGACAACTGGCTATCTG
MXO02402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 1341 | CG31388-RA | 485..1338 | 872..19 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 539..1392 | 872..19 | 4270 | 100 | Minus |
CG31388-RB | 1562 | CG31388-RB | 818..1482 | 683..19 | 3325 | 100 | Minus |
CG31388-RB | 1562 | CG31388-RB | 539..729 | 872..682 | 955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11239110..11239434 | 598..274 | 1625 | 100 | Minus |
3R | 32079331 | 3R | 11238420..11238609 | 872..683 | 950 | 100 | Minus |
3R | 32079331 | 3R | 11239895..11240034 | 158..19 | 700 | 100 | Minus |
3R | 32079331 | 3R | 11239509..11239627 | 276..158 | 595 | 100 | Minus |
3R | 32079331 | 3R | 11238957..11239041 | 682..598 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:49 has no hits.
MXO02402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:39 Download gff for
MXO02402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 485..1341 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:10 Download gff for
MXO02402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 485..1341 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:15 Download gff for
MXO02402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 539..1398 | 11..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:53 Download gff for
MXO02402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 539..1398 | 11..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:53 Download gff for
MXO02402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11238420..11238609 | 683..872 | 100 | -> | Minus |
3R | 11238957..11239041 | 598..682 | 100 | -> | Minus |
3R | 11239111..11239433 | 275..597 | 100 | -> | Minus |
3R | 11239511..11239627 | 158..274 | 100 | -> | Minus |
3R | 11239896..11240038 | 15..157 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:15 Download gff for
MXO02402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7064679..7064763 | 598..682 | 100 | -> | Minus |
arm_3R | 7064142..7064331 | 683..872 | 100 | -> | Minus |
arm_3R | 7064833..7065155 | 275..597 | 100 | -> | Minus |
arm_3R | 7065233..7065349 | 158..274 | 100 | -> | Minus |
arm_3R | 7065618..7065760 | 15..157 | 98 | -> | Minus |
MXO02402.5prime Sequence
822 bp (821 high quality bases) assembled on 2006-12-21
> MXO02402.5prime
CAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGGCTGATCCT
GCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTTTTGCGTCA
AATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAAGTTGCCCA
GGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCATCGATTTC
CGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAGCTAAGGCA
GGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCAATGGCTGG
ATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTACAGCTGAAT
GATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAGAATACGGA
TGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATATGAATGCAT
ACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAACAGATAGC
CAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAATCAGAACC
CGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCACACGTGCA
GCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGCTGCACAAA
TACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGTGACCACTG
TGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTGCAACATGA
TTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCCAATTCCAC
AATCACATTCTGCTGGAGACTC
MXO02402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 1341 | CG31388-RA | 1..814 | 9..822 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 54..868 | 8..822 | 4075 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 54..729 | 8..683 | 3380 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 818..958 | 682..822 | 705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11238047..11238609 | 120..682 | 2815 | 100 | Plus |
3R | 32079331 | 3R | 11237868..11237985 | 8..125 | 590 | 100 | Plus |
3R | 32079331 | 3R | 11238957..11239041 | 683..767 | 425 | 100 | Plus |
3R | 32079331 | 3R | 11239110..11239165 | 767..822 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:33 has no hits.
MXO02402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:41 Download gff for
MXO02402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 1..814 | 9..822 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:11 Download gff for
MXO02402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 1..814 | 9..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:35 Download gff for
MXO02402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 47..868 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:06 Download gff for
MXO02402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 47..868 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:06 Download gff for
MXO02402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11237861..11237985 | 1..125 | 96 | -> | Plus |
3R | 11238053..11238609 | 126..682 | 100 | -> | Plus |
3R | 11238957..11239041 | 683..767 | 100 | -> | Plus |
3R | 11239111..11239165 | 768..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:35 Download gff for
MXO02402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7063583..7063707 | 1..125 | 96 | -> | Plus |
arm_3R | 7063775..7064331 | 126..682 | 100 | -> | Plus |
arm_3R | 7064679..7064763 | 683..767 | 100 | -> | Plus |
arm_3R | 7064833..7064887 | 768..822 | 100 | | Plus |