Clone MXO02403 Report

Search the DGRC for MXO02403

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:3
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptERR-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02403.3prime Sequence

938 bp (816 high quality bases) assembled on 2006-12-21

> MXO02403.3prime
ATGGTCTAGAAAGCTTGCCCTGGCCAGCGGCTCGAGCATCTCGAGGAACA
GTTTCTTCATGGTAATGACTTCATCGCGTGCAATTCCACGCCAAAATCTT
CGCAGGATATCATCCGCCTGCCGCAGCGAAGGCAGCAAAAGCAGCAATTG
TTGCTGATGCGACACGGCCGACGAATGACGCAGCAAGTAGACCACATCGT
TTAGAGAATTAAGAATCGTATCACGAAATGCGCGCAGGGAACTCTGATCA
TCCAGCAGAATGTCGCAGTTGGCCAGCAGGAGCGCCTTTAGCAAGTAGTA
CTCCTCCCTTCGTGGCGATATTCTTTCCATGCGCTGTGCGATCTGGACGC
AGTGGTAGTAGAACTCCGTGTAACCGCACTCCTTGGCCAAATGTTCATCC
ATCCAGACATCCGTGGCGAAGCATAACTTGCCATTGAACGGTAGGGACCG
GAAGGTCAGCTGGAGCGTCAGGATCTCTGCCCACGACACCTGGAGAAGCT
TCATCTGGTCGTTAAGTGGCAGATCTATAAAGCCAGGTATCTGCTTGGCC
CAGCCAATGACGCTGACCAATTCCTTGTCGTAAATATCACTAAGGACGCT
TAGTATCTCATTGGGATCATTGTTGTTGTTGTTTTGGAAAATGCAAGTCC
CATTGGGCGTAACAACGCTGGACTCCAGTTTTATGCTGCCCGAGGAGGAT
GAGGCCTCATCATTAGTTATGCTAGTCGTGTGGACTTGCGGCGGCGGCGT
TTGGACGCTCAAGGCATCCGGCTCATATGAATTGAGCACCTCCAGTATCT
TGACATCGCACAGCGAGGTGGTGTTGGATTGGTATAGCAGCTGCATAGTC
TGGTAAGAGTTTGATACAGGATTCCTTCGGTACTTCTGCCGTCCCTCACG
AACTCGATCCCAGCGCACACCCTCCTTGAGCATGCCCA

MXO02403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7404-PA 1455 ERR-RA 533..1452 938..19 4525 99.6 Minus
CG7404-PB 1491 ERR-RB 569..1488 938..19 4525 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
ERR-RB 1730 CG7404-RB 650..1569 938..19 4555 99.7 Minus
ERR-RA 2119 CG7404-RA 1039..1958 938..19 4555 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8183522..8184429 19..926 4495 99.7 Plus
Blast to na_te.dros performed on 2014-11-28 22:02:58 has no hits.

MXO02403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:42 Download gff for MXO02403.3prime
Subject Subject Range Query Range Percent Splice Strand
ERR-PB 570..1491 16..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:11 Download gff for MXO02403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7404-PB 570..1491 16..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:09 Download gff for MXO02403.3prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 1040..1962 15..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:15 Download gff for MXO02403.3prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 1040..1962 15..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:15 Download gff for MXO02403.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8183517..8184431 15..929 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:09 Download gff for MXO02403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8176617..8177531 15..929 99   Plus

MXO02403.5prime Sequence

876 bp (860 high quality bases) assembled on 2006-12-21

> MXO02403.5prime
CAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAACAGGAGGTG
GACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCAACGGCCAC
GCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTCGCCGGAAA
GGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGCACAATGTA
TCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACAAGTGGCGG
CAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGCGACCAATG
CGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCCGCCGATTG
TGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGTGTGGCGAG
TTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGGCAACATCG
AGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGCGGAGACGC
AAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATGGGCATGCT
CAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCAGAAGTACC
GAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGCTATACCAA
TCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTGCTCAATTC
ATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCAAGTCCACA
CGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCAGCATAAAA
CTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTCCAAAACAC
AACAACAATGATCCCAATGAGATACT

MXO02403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7404-PB 1491 ERR-RB 35..877 7..849 4215 100 Plus
CG7404-PA 1455 ERR-RA 1..841 9..849 4205 100 Plus
CG7404-PB 1491 ERR-RB 878..905 849..876 140 100 Plus
CG7404-PA 1455 ERR-RA 842..869 849..876 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
ERR-RB 1730 CG7404-RB 116..986 7..876 4330 99.9 Plus
ERR-RA 2119 CG7404-RA 505..1375 7..876 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8184483..8185031 555..7 2745 100 Minus
3L 28110227 3L 8184105..8184429 876..553 1575 99.7 Minus
Blast to na_te.dros performed on 2014-11-28 19:37:21 has no hits.

MXO02403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:44 Download gff for MXO02403.5prime
Subject Subject Range Query Range Percent Splice Strand
ERR-PB 30..905 1..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:11 Download gff for MXO02403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7404-PB 30..905 1..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:10 Download gff for MXO02403.5prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 500..1375 1..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:48 Download gff for MXO02403.5prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 500..1375 1..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:48 Download gff for MXO02403.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8184105..8184427 555..876 99 <- Minus
3L 8184484..8185036 1..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:10 Download gff for MXO02403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8177205..8177527 555..876 99 <- Minus
arm_3L 8177584..8178136 1..554 99   Minus