MXO02403.3prime Sequence
938 bp (816 high quality bases) assembled on 2006-12-21
> MXO02403.3prime
ATGGTCTAGAAAGCTTGCCCTGGCCAGCGGCTCGAGCATCTCGAGGAACA
GTTTCTTCATGGTAATGACTTCATCGCGTGCAATTCCACGCCAAAATCTT
CGCAGGATATCATCCGCCTGCCGCAGCGAAGGCAGCAAAAGCAGCAATTG
TTGCTGATGCGACACGGCCGACGAATGACGCAGCAAGTAGACCACATCGT
TTAGAGAATTAAGAATCGTATCACGAAATGCGCGCAGGGAACTCTGATCA
TCCAGCAGAATGTCGCAGTTGGCCAGCAGGAGCGCCTTTAGCAAGTAGTA
CTCCTCCCTTCGTGGCGATATTCTTTCCATGCGCTGTGCGATCTGGACGC
AGTGGTAGTAGAACTCCGTGTAACCGCACTCCTTGGCCAAATGTTCATCC
ATCCAGACATCCGTGGCGAAGCATAACTTGCCATTGAACGGTAGGGACCG
GAAGGTCAGCTGGAGCGTCAGGATCTCTGCCCACGACACCTGGAGAAGCT
TCATCTGGTCGTTAAGTGGCAGATCTATAAAGCCAGGTATCTGCTTGGCC
CAGCCAATGACGCTGACCAATTCCTTGTCGTAAATATCACTAAGGACGCT
TAGTATCTCATTGGGATCATTGTTGTTGTTGTTTTGGAAAATGCAAGTCC
CATTGGGCGTAACAACGCTGGACTCCAGTTTTATGCTGCCCGAGGAGGAT
GAGGCCTCATCATTAGTTATGCTAGTCGTGTGGACTTGCGGCGGCGGCGT
TTGGACGCTCAAGGCATCCGGCTCATATGAATTGAGCACCTCCAGTATCT
TGACATCGCACAGCGAGGTGGTGTTGGATTGGTATAGCAGCTGCATAGTC
TGGTAAGAGTTTGATACAGGATTCCTTCGGTACTTCTGCCGTCCCTCACG
AACTCGATCCCAGCGCACACCCTCCTTGAGCATGCCCA
MXO02403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7404-PA | 1455 | ERR-RA | 533..1452 | 938..19 | 4525 | 99.6 | Minus |
CG7404-PB | 1491 | ERR-RB | 569..1488 | 938..19 | 4525 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ERR-RB | 1730 | CG7404-RB | 650..1569 | 938..19 | 4555 | 99.7 | Minus |
ERR-RA | 2119 | CG7404-RA | 1039..1958 | 938..19 | 4555 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8183522..8184429 | 19..926 | 4495 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:58 has no hits.
MXO02403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:42 Download gff for
MXO02403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-PB | 570..1491 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:11 Download gff for
MXO02403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7404-PB | 570..1491 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:09 Download gff for
MXO02403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 1040..1962 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:15 Download gff for
MXO02403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 1040..1962 | 15..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:15 Download gff for
MXO02403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8183517..8184431 | 15..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:09 Download gff for
MXO02403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8176617..8177531 | 15..929 | 99 | | Plus |
MXO02403.5prime Sequence
876 bp (860 high quality bases) assembled on 2006-12-21
> MXO02403.5prime
CAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAACAGGAGGTG
GACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCAACGGCCAC
GCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTCGCCGGAAA
GGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGCACAATGTA
TCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACAAGTGGCGG
CAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGCGACCAATG
CGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCCGCCGATTG
TGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGTGTGGCGAG
TTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGGCAACATCG
AGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGCGGAGACGC
AAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATGGGCATGCT
CAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCAGAAGTACC
GAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGCTATACCAA
TCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTGCTCAATTC
ATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCAAGTCCACA
CGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCAGCATAAAA
CTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTCCAAAACAC
AACAACAATGATCCCAATGAGATACT
MXO02403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7404-PB | 1491 | ERR-RB | 35..877 | 7..849 | 4215 | 100 | Plus |
CG7404-PA | 1455 | ERR-RA | 1..841 | 9..849 | 4205 | 100 | Plus |
CG7404-PB | 1491 | ERR-RB | 878..905 | 849..876 | 140 | 100 | Plus |
CG7404-PA | 1455 | ERR-RA | 842..869 | 849..876 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ERR-RB | 1730 | CG7404-RB | 116..986 | 7..876 | 4330 | 99.9 | Plus |
ERR-RA | 2119 | CG7404-RA | 505..1375 | 7..876 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8184483..8185031 | 555..7 | 2745 | 100 | Minus |
3L | 28110227 | 3L | 8184105..8184429 | 876..553 | 1575 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:21 has no hits.
MXO02403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:44 Download gff for
MXO02403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-PB | 30..905 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:11 Download gff for
MXO02403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7404-PB | 30..905 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:10 Download gff for
MXO02403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 500..1375 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:48 Download gff for
MXO02403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 500..1375 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:48 Download gff for
MXO02403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8184105..8184427 | 555..876 | 99 | <- | Minus |
3L | 8184484..8185036 | 1..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:10 Download gff for
MXO02403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8177205..8177527 | 555..876 | 99 | <- | Minus |
arm_3L | 8177584..8178136 | 1..554 | 99 | | Minus |