Clone MXO02404 Report

Search the DGRC for MXO02404

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:4
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptnau-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02404.3prime Sequence

894 bp (781 high quality bases) assembled on 2006-12-21

> MXO02404.3prime
ATGGTCTAGAAAGCTTGCAGTGCTGCACTTCCGTTTGAAGTTCACGTGCA
GAGAAGTGGGTGCAGTTGCTCCGGATGAGGGCGGCGATTGGGTATCTGAA
GCGGAGGGCGTGGCCTTATTTTGAATGGGACTCGTGGTGCTCTTATTGAT
GCTCTGAACAATCAGATTTAGACAGTCCAAACTGGAGCCATTGGCATTGC
CATCAAAGTCATATTTCTCCATATGTTTGTTGTAAAAACTAAGTTTATCT
TCTAGATAAGCGCCAGCATAGGAGCTCAGATAATCGGACTGGCAGCTTTT
GCCGCTCAAACTGGGCGCCAGGTTGTCGCCATCGCGTGTGGTACTGGATT
CCTGTAGCAGATCCTCCAGGCTCTCGATATACTCGATGGCATTGCGCAAT
ATCTCAACCTTCGGCAGGCGCTGGTTGGGATTGGATGAAGTGCGTCGCTT
GAGGATCTCGAAGGCCTCGTTAACCTTTCGCAGTCTCCGGCGTTCCCTCA
TAGTGGCCGCTTTCCGACGGTCCACGGTGACGCTCTTCTTTTTGCACGCC
TTGCAGGCCCAGGTGAGGCATGGTCTGGAGGATTGGGCGGAGGAGCAGAC
GAGGGGCGCCAGGACGTGCTCCTCGGAGCTGAGACTGCTGTTCTCGTCAT
CGTAGTCGGTGGTGTAGATGGGCGACGGTGTCATATTCATGCCCAATGGC
TTGTCCAGCTCAACCGGATTATGATTCGCATGACTGTAGTTGCAAGACGA
ACCCGATCCGTTGGCTGAGATGGAAGCCGCTCCACCATTTCCCGCACTCG
CATCACCGACGGCATTGAAGCGGCTAANGAAATTCTGCAGTGTCTGGTGT
GGATTCTGGCCGGGATGGGCTATCGGATTTCTGTGGCTATAGGC

MXO02404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10250-PA 999 nau-RA 124..793 879..210 3331 99.8 Minus
CG10250-PA 999 nau-RA 805..996 210..19 960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
nau-RB 1520 CG10250-RB 510..1385 894..19 4324 99.7 Minus
nau-RA 1532 CG10250-RA 510..1397 894..19 4194 98.3 Minus
CG10300-RA 1484 CG10300-RA 1120..1311 19..210 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23717427..23717848 473..894 2039 98.8 Plus
3R 32079331 3R 23712949..23713140 19..210 960 100 Plus
3R 32079331 3R 23716500..23716625 351..476 630 100 Plus
3R 32079331 3R 23716363..23716439 277..353 385 100 Plus
3R 32079331 3R 23713208..23713275 210..277 340 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:38:27 has no hits.

MXO02404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:45 Download gff for MXO02404.3prime
Subject Subject Range Query Range Percent Splice Strand
nau-PA 109..999 18..894 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:12 Download gff for MXO02404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10250-PA 109..999 18..894 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:54 Download gff for MXO02404.3prime
Subject Subject Range Query Range Percent Splice Strand
nau-RB 510..1389 13..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:20 Download gff for MXO02404.3prime
Subject Subject Range Query Range Percent Splice Strand
nau-RB 510..1389 13..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:20 Download gff for MXO02404.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23712945..23713139 13..209 98 <- Plus
3R 23713208..23713274 210..276 100 <- Plus
3R 23716363..23716437 277..351 100 <- Plus
3R 23716501..23716623 352..474 100 <- Plus
3R 23717429..23717848 475..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:54 Download gff for MXO02404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19542223..19542345 352..474 100 <- Plus
arm_3R 19538667..19538861 13..209 98 <- Plus
arm_3R 19538930..19538996 210..276 100 <- Plus
arm_3R 19542085..19542159 277..351 100 <- Plus
arm_3R 19543151..19543570 475..894 99   Plus