MXO02404.3prime Sequence
894 bp (781 high quality bases) assembled on 2006-12-21
> MXO02404.3prime
ATGGTCTAGAAAGCTTGCAGTGCTGCACTTCCGTTTGAAGTTCACGTGCA
GAGAAGTGGGTGCAGTTGCTCCGGATGAGGGCGGCGATTGGGTATCTGAA
GCGGAGGGCGTGGCCTTATTTTGAATGGGACTCGTGGTGCTCTTATTGAT
GCTCTGAACAATCAGATTTAGACAGTCCAAACTGGAGCCATTGGCATTGC
CATCAAAGTCATATTTCTCCATATGTTTGTTGTAAAAACTAAGTTTATCT
TCTAGATAAGCGCCAGCATAGGAGCTCAGATAATCGGACTGGCAGCTTTT
GCCGCTCAAACTGGGCGCCAGGTTGTCGCCATCGCGTGTGGTACTGGATT
CCTGTAGCAGATCCTCCAGGCTCTCGATATACTCGATGGCATTGCGCAAT
ATCTCAACCTTCGGCAGGCGCTGGTTGGGATTGGATGAAGTGCGTCGCTT
GAGGATCTCGAAGGCCTCGTTAACCTTTCGCAGTCTCCGGCGTTCCCTCA
TAGTGGCCGCTTTCCGACGGTCCACGGTGACGCTCTTCTTTTTGCACGCC
TTGCAGGCCCAGGTGAGGCATGGTCTGGAGGATTGGGCGGAGGAGCAGAC
GAGGGGCGCCAGGACGTGCTCCTCGGAGCTGAGACTGCTGTTCTCGTCAT
CGTAGTCGGTGGTGTAGATGGGCGACGGTGTCATATTCATGCCCAATGGC
TTGTCCAGCTCAACCGGATTATGATTCGCATGACTGTAGTTGCAAGACGA
ACCCGATCCGTTGGCTGAGATGGAAGCCGCTCCACCATTTCCCGCACTCG
CATCACCGACGGCATTGAAGCGGCTAANGAAATTCTGCAGTGTCTGGTGT
GGATTCTGGCCGGGATGGGCTATCGGATTTCTGTGGCTATAGGC
MXO02404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10250-PA | 999 | nau-RA | 124..793 | 879..210 | 3331 | 99.8 | Minus |
CG10250-PA | 999 | nau-RA | 805..996 | 210..19 | 960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nau-RB | 1520 | CG10250-RB | 510..1385 | 894..19 | 4324 | 99.7 | Minus |
nau-RA | 1532 | CG10250-RA | 510..1397 | 894..19 | 4194 | 98.3 | Minus |
CG10300-RA | 1484 | CG10300-RA | 1120..1311 | 19..210 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23717427..23717848 | 473..894 | 2039 | 98.8 | Plus |
3R | 32079331 | 3R | 23712949..23713140 | 19..210 | 960 | 100 | Plus |
3R | 32079331 | 3R | 23716500..23716625 | 351..476 | 630 | 100 | Plus |
3R | 32079331 | 3R | 23716363..23716439 | 277..353 | 385 | 100 | Plus |
3R | 32079331 | 3R | 23713208..23713275 | 210..277 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:27 has no hits.
MXO02404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:45 Download gff for
MXO02404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-PA | 109..999 | 18..894 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:12 Download gff for
MXO02404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10250-PA | 109..999 | 18..894 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:54 Download gff for
MXO02404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RB | 510..1389 | 13..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:20 Download gff for
MXO02404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RB | 510..1389 | 13..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:20 Download gff for
MXO02404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23712945..23713139 | 13..209 | 98 | <- | Plus |
3R | 23713208..23713274 | 210..276 | 100 | <- | Plus |
3R | 23716363..23716437 | 277..351 | 100 | <- | Plus |
3R | 23716501..23716623 | 352..474 | 100 | <- | Plus |
3R | 23717429..23717848 | 475..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:54 Download gff for
MXO02404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19542223..19542345 | 352..474 | 100 | <- | Plus |
arm_3R | 19538667..19538861 | 13..209 | 98 | <- | Plus |
arm_3R | 19538930..19538996 | 210..276 | 100 | <- | Plus |
arm_3R | 19542085..19542159 | 277..351 | 100 | <- | Plus |
arm_3R | 19543151..19543570 | 475..894 | 99 | | Plus |