MXO02405.3prime Sequence
912 bp (762 high quality bases) assembled on 2006-12-21
> MXO02405.3prime
ATGGTCTAGAAAGCTTGCTGTTAACTGGTAGAGTTTCGCATCGCCGACGA
TGTCCACGTCGCTGGAGTTGTCCTCGTCGCCACTGTCCGCCTCCAGATCG
GAGTAGTCATCCGTGGAGTAACCCTGCTGCATCAGGCACATCTGCAGCTG
CTGCTCGCTCGTCGGCTGAGTGGGTGTGCCGCCGACAGATCCGGGATTCA
GTTTGCCGTGCTTGGAGTCCCCGGATGAGGAGGTGGCCTCGCCCGGCTGC
TTGCCCGGTTCGCTGCGTGAGAAGTCGACGGGCTCATTGGCATTGTCGCG
CCGGCGCAGCTGCTTTTTGTGCTTCATGCGGCGGTTCTGGAACCAGGTCT
TCACCTGCGTCTCGCTGAGTCCCAAGGCGGTGGCCAGCTCCACACGCTCC
GGCGTGGACAGGTATCGCTGTCCCTCGAACCGCTTTTCCAGACCGGACAG
CTGCGGATCACTGAACACCGTGCGAGCCTTCCTCCGGCGGCAGTGGCGCA
GGGCATTCACGCCCATTCCCAGTCCGAGGGCCAGTTCCGGCACACAGCCA
GGCGCTCCGAAGAAGGGCGCTCCCCCGAACAGGCTGGCTTGTGATAGAAA
ATAGGGATCCACGGACTTGTAGGTGCCCGACGACGGCGAGAGATATCCGA
GGGTCATTTGAAGAAATCCGTGATCGGTGTAGGGTGCATTCGGATAGAGT
ACTCCATTGGATGCACCACTACCTCCATTCAGGGGCGGCGGAGGCGGAGG
TTGAGGTTGAGTCGTGGGCACCGGCGGATGTTGTGCTGCTCCAGATCCCA
ACTGCTGCGAAATCTGATCTCCGTTGTAGTGGGAAGTTCCGTGTCGCGAG
TGGTGGGTGGGACGTGGAGTGCTGTGCATGGACTTTTGCGTATCCTCGCC
AGCGTAAACCGA
MXO02405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10604-PB | 1290 | bsh-RB | 421..1287 | 885..19 | 4260 | 99.6 | Minus |
| CG10604-PA | 864 | bsh-RA | 1..861 | 879..19 | 4230 | 99.6 | Minus |
| CG5832-PA | 792 | Hmx-RA | 537..574 | 364..327 | 140 | 94.7 | Minus |
| CG1897-PA | 1548 | Dr-RA | 1384..1415 | 363..332 | 135 | 96.8 | Minus |
| CG1264-PA | 1890 | lab-RA | 1641..1667 | 346..320 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bsh-RC | 1503 | CG10604-RC | 532..1425 | 912..19 | 4335 | 99.1 | Minus |
| bsh-RB | 2012 | CG10604-RB | 532..1425 | 912..19 | 4335 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19767048..19767352 | 285..589 | 1525 | 100 | Plus |
| 2L | 23513712 | 2L | 19767740..19768012 | 588..860 | 1350 | 99.6 | Plus |
| 2L | 23513712 | 2L | 19766363..19766629 | 19..285 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:53 has no hits.
MXO02405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:47 Download gff for
MXO02405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10604-PB | 395..1290 | 18..911 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:12 Download gff for
MXO02405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10604-PB | 395..1290 | 18..911 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:24 Download gff for
MXO02405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 533..1425 | 19..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:10 Download gff for
MXO02405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 533..1425 | 19..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:10 Download gff for
MXO02405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19766363..19766628 | 19..284 | 100 | <- | Plus |
| 2L | 19767048..19767350 | 285..587 | 100 | <- | Plus |
| 2L | 19767740..19768014 | 588..862 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:24 Download gff for
MXO02405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19766363..19766628 | 19..284 | 100 | <- | Plus |
| arm_2L | 19767048..19767350 | 285..587 | 100 | <- | Plus |
| arm_2L | 19767740..19768014 | 588..862 | 98 | <- | Plus |
MXO02405.5prime Sequence
825 bp (775 high quality bases) assembled on 2006-12-21
> MXO02405.5prime
CAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTGCGGACGCA
CATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCGGCGGCGAT
GGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTCCATCGAGC
ACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATAATAGTAGT
GATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCAAAGAGCAG
CAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGACAATAATC
CGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCACATCCGCCG
GCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAACCAGGCTGC
GTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAGCACTCCAC
GGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACGGAGATCAG
ATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCGGTGCCCAC
GACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGGTAGTGGTG
CATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATCACGGATTT
CTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACCTACAAGTC
CGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGGAGCGCCCT
TCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGACTGGGAATG
GGCGTGAATGCCCTGCGCCACTGCC
MXO02405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10604-PB | 1290 | bsh-RB | 1..817 | 9..825 | 4085 | 100 | Plus |
| CG10604-PA | 864 | bsh-RA | 1..391 | 435..825 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bsh-RC | 1503 | CG10604-RC | 139..955 | 9..825 | 4085 | 100 | Plus |
| bsh-RB | 2012 | CG10604-RB | 139..955 | 9..825 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19768485..19768929 | 453..9 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 19767740..19768015 | 726..451 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 19767252..19767352 | 825..725 | 505 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6944 | 171..364 | 135 | 57.8 | Plus |
MXO02405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:49 Download gff for
MXO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10604-PB | 1..817 | 9..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:12 Download gff for
MXO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10604-PB | 1..817 | 9..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:50 Download gff for
MXO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..955 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:55 Download gff for
MXO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..955 | 1..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:55 Download gff for
MXO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19767740..19768014 | 452..726 | 100 | <- | Minus |
| 2L | 19767252..19767350 | 727..825 | 100 | <- | Minus |
| 2L | 19768487..19768936 | 1..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:50 Download gff for
MXO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19767252..19767350 | 727..825 | 100 | <- | Minus |
| arm_2L | 19767740..19768014 | 452..726 | 100 | <- | Minus |
| arm_2L | 19768487..19768936 | 1..451 | 99 | | Minus |
