MXO02406.5prime Sequence
561 bp (561 high quality bases) assembled on 2006-12-21
> MXO02406.5prime
CAGTCGACATGCTTATAATGGATATACAGACATCGACACATCATATCCAT
GGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCACACATTCT
ACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCAGCTAGAGC
ACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATCAGCAACAG
GACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACTGGTGATAG
CCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCATCAACATC
TTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATAAGTCAAAA
GCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAACATTTCGGA
TGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATCCCAAGGAA
TAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAGAAGACTCA
CACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTTCTAGCAAG
CTTTCTAGACC
MXO02406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11049-PA | 2535 | sv-RA | 1..525 | 9..533 | 2625 | 100 | Plus |
| CG11049-PC | 1944 | sv-RC | 1..525 | 9..533 | 2625 | 100 | Plus |
| CG11049-PD | 2043 | sv-RD | 1..525 | 9..533 | 2625 | 100 | Plus |
| CG11049-PE | 2385 | sv-RE | 1..525 | 9..533 | 2625 | 100 | Plus |
| CG11049-PF | 2379 | sv-RF | 1..525 | 9..533 | 2625 | 100 | Plus |
| CG11049-PG | 1887 | sv-RG | 1..525 | 9..533 | 2625 | 100 | Plus |
| CG11049-PH | 2529 | sv-RH | 1..525 | 9..533 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sv-RH | 4501 | CG11049-RH | 107..631 | 9..533 | 2625 | 100 | Plus |
| sv-RG | 2257 | CG11049-RG | 293..817 | 9..533 | 2625 | 100 | Plus |
| sv-RF | 2749 | CG11049-RF | 293..817 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1092286..1092628 | 9..351 | 1715 | 100 | Plus |
| 4 | 1348131 | 4 | 1095574..1095716 | 350..492 | 715 | 100 | Plus |
| 4 | 1348131 | 4 | 1095791..1095846 | 490..545 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 109..202 | 126 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 130..202 | 110 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 142..202 | 107 | 63.9 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 159..260 | 106 | 59.8 | Plus |
MXO02406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:52 Download gff for
MXO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11049-PH | 1..525 | 9..533 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:13 Download gff for
MXO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11049-PH | 1..525 | 9..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:07 Download gff for
MXO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sv-RF | 293..817 | 9..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:45 Download gff for
MXO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sv-RF | 293..817 | 9..533 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:45 Download gff for
MXO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1095576..1095716 | 352..492 | 100 | -> | Plus |
| 4 | 1095794..1095846 | 493..545 | 100 | | Plus |
| 4 | 1092286..1092628 | 9..351 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:07 Download gff for
MXO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1112912..1113254 | 9..351 | 100 | -> | Plus |
| arm_4 | 1116202..1116342 | 352..492 | 100 | -> | Plus |
| arm_4 | 1116420..1116472 | 493..545 | 100 | | Plus |
MXO02406.3prime Sequence
561 bp (561 high quality bases) assembled on 2006-12-21
> MXO02406.3prime
ATGGTCTAGAAAGCTTGCTAGAAATATCTTACCATCACCCGAAATACTGC
CCTGCGAACTGTGTGAGTCTTCTGCCCCGTTTTGAATATCATTCATGGCT
GTTATCCACTCTATTCCTTGGGATTGTGTTATGAAATTGTTTGCAGATGG
CGTCGTATTGGCATCCGAAATGTTGCTCAGTGTCCGGCTTGAATACTCAT
CATACTTGTTCGCTTTTGACTTATCTTCCATTTGAGACGAGGTATACATG
TTACTTCCGGAAAGATGTTGATGACCATGTTGATTTTGATTTGTATTAAT
AGTAGTGCTCAGGCTATCACCAGTGCGGGTGTTTTGTAAATTGTGCAAAG
TCGGTGAAACGTCCTGTTGCTGATGATGAGTGAGGTGATGTTGTTGCAGA
TGTTGGGAATCGTGCTCTAGCTGGCCTGTACTTGTATTAAGGGTTTCTTC
TTGAGTTGAATGTAGAATGTGTGGATGTAAAATACGATGTTGGAGCTCAT
GTGTTCCGAGCCCATGGATATGATGTGTCGATGTCTGTATATCCATTATA
AGCATGTCGAC
MXO02406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11049-PA | 2535 | sv-RA | 1..525 | 555..31 | 2625 | 100 | Minus |
| CG11049-PC | 1944 | sv-RC | 1..525 | 555..31 | 2625 | 100 | Minus |
| CG11049-PD | 2043 | sv-RD | 1..525 | 555..31 | 2625 | 100 | Minus |
| CG11049-PE | 2385 | sv-RE | 1..525 | 555..31 | 2625 | 100 | Minus |
| CG11049-PF | 2379 | sv-RF | 1..525 | 555..31 | 2625 | 100 | Minus |
| CG11049-PG | 1887 | sv-RG | 1..525 | 555..31 | 2625 | 100 | Minus |
| CG11049-PH | 2529 | sv-RH | 1..525 | 555..31 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sv-RH | 4501 | CG11049-RH | 107..631 | 555..31 | 2625 | 100 | Minus |
| sv-RG | 2257 | CG11049-RG | 293..817 | 555..31 | 2625 | 100 | Minus |
| sv-RF | 2749 | CG11049-RF | 293..817 | 555..31 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1092286..1092628 | 555..213 | 1715 | 100 | Minus |
| 4 | 1348131 | 4 | 1095574..1095716 | 214..72 | 715 | 100 | Minus |
| 4 | 1348131 | 4 | 1095791..1095846 | 74..19 | 280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 455..362 | 126 | 61.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 434..362 | 110 | 65.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 422..362 | 107 | 63.9 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 405..304 | 106 | 59.8 | Minus |
MXO02406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:50 Download gff for
MXO02406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11049-PH | 1..525 | 31..555 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:13 Download gff for
MXO02406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11049-PH | 1..525 | 31..555 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:03 Download gff for
MXO02406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sv-RF | 289..817 | 31..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:17 Download gff for
MXO02406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sv-RF | 289..817 | 31..561 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:17 Download gff for
MXO02406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1092282..1092628 | 213..561 | 98 | -> | Minus |
| 4 | 1095576..1095716 | 72..212 | 100 | -> | Minus |
| 4 | 1095794..1095846 | 19..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:03 Download gff for
MXO02406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1112908..1113254 | 213..561 | 98 | -> | Minus |
| arm_4 | 1116202..1116342 | 72..212 | 100 | -> | Minus |
| arm_4 | 1116420..1116472 | 19..71 | 100 | | Minus |
