Clone Sequence Records
MXO02407.3prime Sequence
845 bp (741 high quality bases) assembled on 2006-12-21
> MXO02407.3prime
ATGGTCTAGAAAGCTTGCCGTTGGGTTCACACCCTTCAGCGTTAGTGTGT
TATCCTCGTAGACCTCCAGAACGTCGGCCAAATGTTCGTTGTCTCTGGGC
TTCTTGAACTGCCGCTTCTTGTTGGCCGCCTTCTTGCGCTTGGGAATTGC
TTTCTTGAGGCCATGGTCCTGCATGGAGCGAATGCCCTGCTTCTCGAGGT
ACTCGTCAATCTTGGCGTCGTCCATTGCATCGACCGTAGCCGAGCGCCAT
AGCTTCTGGAACTCGTCGTCCACCGAAAAATTAGCAGTCCTGTCATTGTA
AAATAAAATCTTCTTTTTGTCAATGGGTCTAACAACAAAAAGTATTTCGG
CTGATCGGTTCTTCAGCACCTTTTCGCAGTGTGGTAGAGATTCCTGGACA
TCGTCCAGCAAAATGCCGCCCAGGCCCTTTAAATCATGTTGCTTGAGCAG
ACGCATCAGCGTTTTGCCATCCTTGATCTTGTAGACTGGCTTGAAACTGA
ACTTGGTGCCACATGGACTGGCTTCCACCTTGGGATTGTTGTGCAGAGCC
TCGCTAGCAAGCCAATTCTTAACGGATTGCCCAATGTCCAGCTGGTTGGT
CTCGTCCAGAATCTCATCGATGGTCAGGGGATGGTCGTCGCCGTCCTGGT
GACGTGTGCGCATGAATTTCACAATCTTGGCCAGCACTCCAAAGCGGTAC
TGGGAACTGCCGGACATGGTCTTGTATGTTGTGGCATCCAGCCTGGGAGC
ATTGGGCGGGCGCATTTTGCGCCTGGGATCATCGCTAGGCGGCGGTGGAG
CTGGTCTATCGGGCTTGGACTTCTTTTCCACGGTGGGCGTGGCCA
MXO02407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1276-PA | 879 | TfIIEbeta-RA | 50..876 | 845..19 | 4110 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEbeta-RA | 1049 | CG1276-RA | 162..988 | 845..19 | 4120 | 99.9 | Minus |
| TfIIEbeta-RB | 1121 | CG1276-RB | 247..1060 | 832..19 | 4055 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4287687..4287981 | 564..270 | 1475 | 100 | Minus |
| 3L | 28110227 | 3L | 4288033..4288288 | 274..19 | 1280 | 100 | Minus |
| 3L | 28110227 | 3L | 4287464..4287626 | 727..565 | 815 | 100 | Minus |
| 3L | 28110227 | 3L | 4287284..4287388 | 832..728 | 510 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:48 has no hits.
MXO02407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:54 Download gff for
MXO02407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1276-PA | 51..879 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:14 Download gff for
MXO02407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1276-PA | 51..879 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:06 Download gff for
MXO02407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEbeta-RA | 163..988 | 19..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:54 Download gff for
MXO02407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEbeta-RA | 163..988 | 19..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:54 Download gff for
MXO02407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4287284..4287388 | 728..832 | 99 | -> | Minus |
| 3L | 4287464..4287626 | 565..727 | 100 | -> | Minus |
| 3L | 4287687..4287977 | 274..564 | 100 | -> | Minus |
| 3L | 4288034..4288288 | 19..273 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:06 Download gff for
MXO02407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4287284..4287388 | 728..832 | 99 | -> | Minus |
| arm_3L | 4287464..4287626 | 565..727 | 100 | -> | Minus |
| arm_3L | 4287687..4287977 | 274..564 | 100 | -> | Minus |
| arm_3L | 4288034..4288288 | 19..273 | 100 | | Minus |
MXO02407.5prime Sequence
878 bp (769 high quality bases) assembled on 2006-12-21
> MXO02407.5prime
CAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCTTCAAAAAG
CGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCCGATAGACC
AGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCGCCCGCCCA
ATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCGGCAGTTCC
CAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATGCGCACACG
TCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGATTCTGGACG
AGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGCTTGCTAGC
GAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGTGGCACCAA
GTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAACGCTGATGC
GTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTTTGCTGGAC
GATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAGAACCGATC
AGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAAGATTTTAT
TTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGTTCCAGAAG
CTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCCAAGATTGACGA
GTACCTCGAGAAGCAGGGCATTCGCTCCATGCAGGACCATGGCCTCAAGA
AAGCAATTCCCAAGCGCAAGAAGGCGGCCAACAAGAAGCGGCAGTTCAAG
AAGCCCAGAGACAACGAACATTTGGCCGACGTTCTGGAGGTCTACGAGGA
TAACACACTAACGCTGAAGGGTGTGAAC
MXO02407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1276-PA | 879 | TfIIEbeta-RA | 1..870 | 9..878 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEbeta-RA | 1049 | CG1276-RA | 108..982 | 4..878 | 4360 | 99.9 | Plus |
| TfIIEbeta-RB | 1121 | CG1276-RB | 247..1054 | 71..878 | 4040 | 100 | Plus |
| TfIIEbeta-RB | 1121 | CG1276-RB | 108..174 | 4..70 | 320 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4287687..4287981 | 339..633 | 1475 | 100 | Plus |
| 3L | 28110227 | 3L | 4288033..4288282 | 629..878 | 1250 | 100 | Plus |
| 3L | 28110227 | 3L | 4287464..4287626 | 176..338 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 4287284..4287388 | 71..175 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 4287145..4287211 | 4..70 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:00 has no hits.
MXO02407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:55 Download gff for
MXO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1276-PA | 1..870 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:14 Download gff for
MXO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1276-PA | 1..870 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:44 Download gff for
MXO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEbeta-RA | 105..982 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:39 Download gff for
MXO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEbeta-RA | 105..982 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:39 Download gff for
MXO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4287142..4287211 | 1..70 | 97 | -> | Plus |
| 3L | 4287284..4287388 | 71..175 | 100 | -> | Plus |
| 3L | 4287464..4287626 | 176..338 | 100 | -> | Plus |
| 3L | 4287687..4287977 | 339..629 | 100 | -> | Plus |
| 3L | 4288034..4288282 | 630..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:44 Download gff for
MXO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4287142..4287211 | 1..70 | 97 | -> | Plus |
| arm_3L | 4287284..4287388 | 71..175 | 100 | -> | Plus |
| arm_3L | 4287464..4287626 | 176..338 | 100 | -> | Plus |
| arm_3L | 4287687..4287977 | 339..629 | 100 | -> | Plus |
| arm_3L | 4288034..4288282 | 630..878 | 100 | | Plus |
