MXO02408.3prime Sequence
882 bp (825 high quality bases) assembled on 2006-12-21
> MXO02408.3prime
ATGGTCTAGAAAGCTTGCATGACGATAATTATCCTGCTGCTGCTGCGAGG
ACCCAGAACTGTTGCTGCGACATCTCTTGTTCTGAGCCGGGGACTCGCCC
ATATCGAGACTTTCGTTATCGCTATCCATGGTCTCGCTGCAATCGCCATC
GTTATCGCCGCCCATATCGTCCTGTTTCCTTTTGGCCGTGGCCATTTCCG
CCGCATGCCGTTTGCGCCATTTGGTGCGACGATTCTGGAACCAGACCTTA
ACCTGCGACTCGGACATTCCTAAGGCGTAAGCGAGCTTGGCACGCTCTGG
TCCGGCCAGATACTTGGTTTGCTCGAATGTCTTCTCCAGGGCGAAGATCT
GCTGACCACTGAATGTTGGGCGGGTGTGTTTCTTTTTGCCATCCTTGTCG
TTCGATGGATGATGCTGATGCGATTGAGACAGATTGGCGGACATCGTGTT
GGAGAGCCGTTCGCGCCACGCGATGGGATTGGCCACCAGTCCCTGTAATC
CTGGCCAGTACAGGTGCGTGCGGTCCACTATGTGTCCGGCGTGGGTCTTC
AGTGGCGCCCCTTGGCTCTGCGATAGATACTGGGCCATTCCCGCTGCTGC
GGCGGCGATCGAGAAGCGGGGAATGCCAGCTCCTGTTAAAGCACTTAGAC
CCGCCGATGTCACCGGCGGTGGTTTGGAGAGGATGGTATCGATGCCGTGC
GGATTGGGTGCACCCTGGCTGTTGGTGTTCGTAGTCGTGGTGGAGGACGA
CGATGAGCTGCCACCGGATCCGCGATCACTGATCAAATGCGAATTCGGGC
TGTGGCTATAGGACAAGCCATTTGCCGACGCCGACGATCCACCGACTCCT
TGACCCTTCATTTCCGTGGTCATCGAGTGAAG
MXO02408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13475-PA | 1542 | HGTX-RA | 676..1539 | 882..19 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HGTX-RA | 3014 | CG13475-RA | 1503..2366 | 882..19 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14597786..14598038 | 630..882 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 14583870..14584099 | 19..248 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 14589999..14590197 | 245..443 | 995 | 100 | Plus |
3L | 28110227 | 3L | 14595890..14596077 | 444..631 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:39 has no hits.
MXO02408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:57 Download gff for
MXO02408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-PA | 676..1542 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:14 Download gff for
MXO02408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13475-PA | 676..1542 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:23 Download gff for
MXO02408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 1503..2369 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:57 Download gff for
MXO02408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 1503..2369 | 15..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:57 Download gff for
MXO02408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14583866..14584097 | 15..246 | 99 | <- | Plus |
3L | 14590001..14590197 | 247..443 | 100 | <- | Plus |
3L | 14595890..14596075 | 444..629 | 100 | <- | Plus |
3L | 14597786..14598038 | 630..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:23 Download gff for
MXO02408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14576966..14577197 | 15..246 | 99 | <- | Plus |
arm_3L | 14583101..14583297 | 247..443 | 100 | <- | Plus |
arm_3L | 14588990..14589175 | 444..629 | 100 | <- | Plus |
arm_3L | 14590886..14591138 | 630..882 | 100 | | Plus |
MXO02408.5prime Sequence
849 bp (827 high quality bases) assembled on 2006-12-21
> MXO02408.5prime
CAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATAGTTTTGCG
GCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCATCATTTGGC
GGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGCGATGGCGG
CGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAGCGGCGGCA
GCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAATAGCAGTAA
CAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACATGGCGGAG
GTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCGCCTCTTCT
AGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACACAATTCCAG
TCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAGGAGCAGCG
GAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCACCGCCGCAG
GGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGGGCAAAGTT
CCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGCCAACCATG
CCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACCACAAGCTC
CCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCGATGACCAC
GGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGCAAATGGCT
TGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATCGCGGATCC
GGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACCAACAGCC
MXO02408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13475-PA | 1542 | HGTX-RA | 1..841 | 9..849 | 4205 | 100 | Plus |
CG3600-PA | 972 | CG3600-RA | 875..907 | 211..243 | 165 | 100 | Plus |
CG9056-PA | 7461 | CG9056-RA | 1684..1720 | 228..264 | 135 | 94.5 | Plus |
CG7734-PA | 7599 | shn-RA | 465..491 | 215..241 | 135 | 100 | Plus |
CG7734-PB | 7599 | shn-RB | 465..491 | 215..241 | 135 | 100 | Plus |
CG7734-PC | 7599 | shn-RC | 465..491 | 215..241 | 135 | 100 | Plus |
CG7734-PD | 7734 | shn-RD | 600..626 | 215..241 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HGTX-RA | 3014 | CG13475-RA | 824..1668 | 5..849 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14597873..14598717 | 849..5 | 4210 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-28 19:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 329..355 | 645..619 | 108 | 88.9 | Minus |
MXO02408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:58 Download gff for
MXO02408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-PA | 1..841 | 9..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:15 Download gff for
MXO02408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13475-PA | 1..841 | 9..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:13 Download gff for
MXO02408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 820..1668 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:25 Download gff for
MXO02408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HGTX-RA | 820..1668 | 1..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:25 Download gff for
MXO02408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14597873..14598718 | 1..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:13 Download gff for
MXO02408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14590973..14591818 | 1..849 | 99 | | Minus |