Clone MXO02408 Report

Search the DGRC for MXO02408

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:8
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptHGTX-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02408.3prime Sequence

882 bp (825 high quality bases) assembled on 2006-12-21

> MXO02408.3prime
ATGGTCTAGAAAGCTTGCATGACGATAATTATCCTGCTGCTGCTGCGAGG
ACCCAGAACTGTTGCTGCGACATCTCTTGTTCTGAGCCGGGGACTCGCCC
ATATCGAGACTTTCGTTATCGCTATCCATGGTCTCGCTGCAATCGCCATC
GTTATCGCCGCCCATATCGTCCTGTTTCCTTTTGGCCGTGGCCATTTCCG
CCGCATGCCGTTTGCGCCATTTGGTGCGACGATTCTGGAACCAGACCTTA
ACCTGCGACTCGGACATTCCTAAGGCGTAAGCGAGCTTGGCACGCTCTGG
TCCGGCCAGATACTTGGTTTGCTCGAATGTCTTCTCCAGGGCGAAGATCT
GCTGACCACTGAATGTTGGGCGGGTGTGTTTCTTTTTGCCATCCTTGTCG
TTCGATGGATGATGCTGATGCGATTGAGACAGATTGGCGGACATCGTGTT
GGAGAGCCGTTCGCGCCACGCGATGGGATTGGCCACCAGTCCCTGTAATC
CTGGCCAGTACAGGTGCGTGCGGTCCACTATGTGTCCGGCGTGGGTCTTC
AGTGGCGCCCCTTGGCTCTGCGATAGATACTGGGCCATTCCCGCTGCTGC
GGCGGCGATCGAGAAGCGGGGAATGCCAGCTCCTGTTAAAGCACTTAGAC
CCGCCGATGTCACCGGCGGTGGTTTGGAGAGGATGGTATCGATGCCGTGC
GGATTGGGTGCACCCTGGCTGTTGGTGTTCGTAGTCGTGGTGGAGGACGA
CGATGAGCTGCCACCGGATCCGCGATCACTGATCAAATGCGAATTCGGGC
TGTGGCTATAGGACAAGCCATTTGCCGACGCCGACGATCCACCGACTCCT
TGACCCTTCATTTCCGTGGTCATCGAGTGAAG

MXO02408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13475-PA 1542 HGTX-RA 676..1539 882..19 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 1503..2366 882..19 4320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597786..14598038 630..882 1265 100 Plus
3L 28110227 3L 14583870..14584099 19..248 1150 100 Plus
3L 28110227 3L 14589999..14590197 245..443 995 100 Plus
3L 28110227 3L 14595890..14596077 444..631 940 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:37:39 has no hits.

MXO02408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:57 Download gff for MXO02408.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-PA 676..1542 15..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:14 Download gff for MXO02408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13475-PA 676..1542 15..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:23 Download gff for MXO02408.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 1503..2369 15..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:57 Download gff for MXO02408.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 1503..2369 15..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:57 Download gff for MXO02408.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14583866..14584097 15..246 99 <- Plus
3L 14590001..14590197 247..443 100 <- Plus
3L 14595890..14596075 444..629 100 <- Plus
3L 14597786..14598038 630..882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:23 Download gff for MXO02408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14576966..14577197 15..246 99 <- Plus
arm_3L 14583101..14583297 247..443 100 <- Plus
arm_3L 14588990..14589175 444..629 100 <- Plus
arm_3L 14590886..14591138 630..882 100   Plus

MXO02408.5prime Sequence

849 bp (827 high quality bases) assembled on 2006-12-21

> MXO02408.5prime
CAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATAGTTTTGCG
GCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCATCATTTGGC
GGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGCGATGGCGG
CGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAGCGGCGGCA
GCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAATAGCAGTAA
CAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACATGGCGGAG
GTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCGCCTCTTCT
AGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACACAATTCCAG
TCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAGGAGCAGCG
GAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCACCGCCGCAG
GGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGGGCAAAGTT
CCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGCCAACCATG
CCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACCACAAGCTC
CCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCGATGACCAC
GGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGCAAATGGCT
TGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATCGCGGATCC
GGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACCAACAGCC

MXO02408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13475-PA 1542 HGTX-RA 1..841 9..849 4205 100 Plus
CG3600-PA 972 CG3600-RA 875..907 211..243 165 100 Plus
CG9056-PA 7461 CG9056-RA 1684..1720 228..264 135 94.5 Plus
CG7734-PA 7599 shn-RA 465..491 215..241 135 100 Plus
CG7734-PB 7599 shn-RB 465..491 215..241 135 100 Plus
CG7734-PC 7599 shn-RC 465..491 215..241 135 100 Plus
CG7734-PD 7734 shn-RD 600..626 215..241 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 824..1668 5..849 4210 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597873..14598717 849..5 4210 99.9 Minus
Blast to na_te.dros performed 2014-11-28 19:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 329..355 645..619 108 88.9 Minus

MXO02408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:58 Download gff for MXO02408.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-PA 1..841 9..849 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:15 Download gff for MXO02408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13475-PA 1..841 9..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:13 Download gff for MXO02408.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 820..1668 1..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:25 Download gff for MXO02408.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 820..1668 1..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:25 Download gff for MXO02408.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14597873..14598718 1..849 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:13 Download gff for MXO02408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14590973..14591818 1..849 99   Minus