MXO02409.3prime Sequence
853 bp (714 high quality bases) assembled on 2006-12-21
> MXO02409.3prime
ATGGTCTAGAAAGCTTGCGATCTTGCGCTGACTGTACATGTCGGAGATGA
GGCGCACAATGGTGATGTCGCCGATGGTCTTTCGGAAGAACAGCTCCTCG
ATGGTGAAGCTTGAGACCTTGTGCATCAGCTGCACCACGCCCAAGAGCGT
CTGGAATCGCATGGGCTGCGAGGGATGGGTCCTCTGGATGTAGTTGTGCA
GCGCACTCCGGGCATCGTTGTGCATGGCCGCCACTTTTCCCGACTCCAGA
AGACCCCTGGATTCAGCAGAGGCCGAGGAGTTCGGGCTGCCGCTTCCTGT
CAGGATTGAGCTGTTGGCTAAATCCTCGGTAGAACTTGCCGACGGTGGTG
ACTTACGGAAGAGCGAAATAGCCCTCAGACACTCGTACTCGGTGCTGTCA
ATGTTCAGATGGCACAGTTGGTTCAGCACCTCCTGGAAGGCGTGCACCTC
GCGGGTCACCATGCCCATGATCTCCCGGTTGGCATTCTCGGACTCGTAGA
CGAACAGCAGCTGGGCGAAATTCATGGGCATTAGGTACTGGGCCATGGCC
AGGATGAAGAACTCCTTCCAGGACTCCTCCAGCAGGAGCAGCTGATCCGG
CATGGGCAGTTCGGTGAAGGCCCGTACGCTCTTGATCCAGTTGACGTTCT
TGAATAGGTGTTCCGCCGCGGTTTCCTTGATGTGCTCAGCTGCCATCAGC
GGAGGAGTGGGGGGCAGGGCCCGAGTGGCCAGGGCATTCATGTAGGCGGC
GGTGGGCGAGAAGAAACCGTGGTGTCCTTGGTGCACCGGGTGATGGGGCA
CTCGTGGCACGGATAAGTCCAAGACAGCGGCAGCCGATGGTGGCGGCTGG
AAG
MXO02409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1378-PA | 1359 | tll-RA | 522..1356 | 853..19 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1965 | CG1378-RA | 754..1588 | 853..19 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30853189..30854023 | 853..19 | 4175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:10:53 has no hits.
MXO02409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:00 Download gff for
MXO02409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 522..1359 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:15 Download gff for
MXO02409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 522..1359 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:10 Download gff for
MXO02409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 754..1592 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:11 Download gff for
MXO02409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 754..1592 | 15..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:11 Download gff for
MXO02409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30853189..30854027 | 15..853 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:10 Download gff for
MXO02409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26678911..26679749 | 15..853 | 99 | | Minus |
MXO02409.5prime Sequence
838 bp (718 high quality bases) assembled on 2006-12-21
> MXO02409.5prime
CAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGGATCAGAAA
TACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATTCTATACCA
TGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCATTACGGCA
TCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCATTCGGAGA
TCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGTGTGGTGGA
CAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAAGTGCTTTG
AGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGACCGCGGAAC
TCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATGATGGGCGC
CGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACACGGCTGCCT
TGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGCCCCAGAGG
GCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCACCATCGGC
TGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCACCCGGTGC
ACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACATGAATGCC
CTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCAGCTGAGCA
CATCAAGGAAACCGCGGCGGATCACCTATTCAAGAACGTCAACTGGATCA
AGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGCTGCTCCTG
CTGGAGGAGTCCTGGAAGGAGTTCTTCATCCTGGCCAT
MXO02409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1378-PA | 1359 | tll-RA | 1..830 | 9..838 | 4125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1965 | CG1378-RA | 233..1062 | 9..838 | 4135 | 99.9 | Plus |
| dsf-RB | 3537 | CG9019-RB | 289..379 | 105..195 | 215 | 82.4 | Plus |
| dsf-RA | 3042 | CG9019-RA | 289..379 | 105..195 | 215 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30852744..30853497 | 85..838 | 3755 | 99.9 | Plus |
| 3R | 32079331 | 3R | 30852547..30852624 | 9..86 | 390 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2896..3018 | 80..201 | 116 | 58.1 | Plus |
MXO02409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:02 Download gff for
MXO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 1..830 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:15 Download gff for
MXO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 1..830 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:18 Download gff for
MXO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1062 | 1..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:42 Download gff for
MXO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1062 | 1..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:42 Download gff for
MXO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30852540..30852622 | 1..84 | 96 | -> | Plus |
| 3R | 30852744..30853497 | 85..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:18 Download gff for
MXO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26678262..26678344 | 1..84 | 96 | -> | Plus |
| arm_3R | 26678466..26679219 | 85..838 | 99 | | Plus |
