Clone MXO02410 Report

Search the DGRC for MXO02410

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:10
Vector:pMK33-CTAP-BD
Associated Gene/Transcripte(y)2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02410.3prime Sequence

327 bp (327 high quality bases) assembled on 2006-12-21

> MXO02410.3prime
ATGGTCTAGAAAGCTTGCGGATTCGTCCTCTGGCTCATCGGGTTCCTCCT
CAATTTCCGTGAGAATGGTGCGTATCTTCATAAGCAGCTCCTTTTTGACG
GCATCCGGGACCAGGGTGCGTGCCTTGGGTGTTACCTCGGCGATCAGCTG
CTCTACGGTGAAGCTGTTGTTGGTGCCCTTCTCCATCAGGATGTTGCGGC
ACATCAGACGCACCTCGTCCCGCCAGCCACATTCCGTAAGGCGGCTGCAG
AGCAAATCCTTGATCTTGGAACGGTCGCCGGTTAGCACCGTGTACTGATC
AACTGCGCCGGAAGTGCTCATGTCGAC

MXO02410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15191-PA 306 e(y)2-RA 1..303 321..19 1515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..445 321..19 1515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576176..11576478 19..321 1515 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:12:02 has no hits.

MXO02410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:04 Download gff for MXO02410.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-PA 1..306 15..321 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:16 Download gff for MXO02410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15191-PA 1..306 15..321 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:24 Download gff for MXO02410.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 141..452 10..327 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:01 Download gff for MXO02410.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 141..452 10..327 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:01 Download gff for MXO02410.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11576169..11576480 10..327 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:24 Download gff for MXO02410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470202..11470513 10..327 97   Plus

MXO02410.5prime Sequence

327 bp (327 high quality bases) assembled on 2006-12-21

> MXO02410.5prime
CAGTCGACATGAGCACTTCCGGCGCAGTTGATCAGTACACGGTGCTAACC
GGCGACCGTTCCAAGATCAAGGATTTGCTCTGCAGCCGCCTTACGGAATG
TGGCTGGCGGGACGAGGTGCGTCTGATGTGCCGCAACATCCTGATGGAGA
AGGGCACCAACAACAGCTTCACCGTAGAGCAGCTGATCGCCGAGGTAACA
CCCAAGGCACGCACCCTGGTCCCGGATGCCGTCAAAAAGGAGCTGCTTAT
GAAGATACGCACCATTCTCACGGAAATTGAGGAGGAACCCGATGAGCCAG
AGGACGAATCCGCAAGCTTTCTAGACC

MXO02410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15191-PA 306 e(y)2-RA 1..303 9..311 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..445 9..311 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576176..11576478 311..9 1515 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:58:50 has no hits.

MXO02410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:05 Download gff for MXO02410.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-PA 1..306 9..315 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:16 Download gff for MXO02410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15191-PA 1..306 9..315 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:48 Download gff for MXO02410.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 2..320 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:24 Download gff for MXO02410.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 2..320 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:24 Download gff for MXO02410.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11576169..11576481 2..320 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:48 Download gff for MXO02410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470202..11470514 2..320 97   Minus