MXO02411.3prime Sequence
918 bp (822 high quality bases) assembled on 2006-12-21
> MXO02411.3prime
ATGGTCTAGAAAGCTTGCATCCTGGGAGTCGCCAGCATTGCTGGTGCGAT
CCAACCCTATGCCGCCCGCTCCGTTGGACTCGGATTGCTCGATATCCGCC
GCACTGAGCACTCCCGGAAGGTAGCCGGTTCCGGCGTAGGGAGCAGTCAG
GAATCGCTTGGCGTGCGCCTGCATGAAGGGATGGTAGCGATGGGTGGGGG
AGCCGAAAACCGAGGGCGGCACCAGCGGGGAGAAGGCGGACTTCATGGGA
AAGGGCGGCGATGGCGGCACCTGCGGCGGAGTCTGTCCCAAATCCTCGCC
AGCCAGCATGCACTCCATGGCCTGGAGCACGTCGCCACGGAACCGCTGCA
TCAGCTGCTCCACATCGCTGCGCCGTCGGTTGGGGAACACCCTCATCAGG
ACGTCGATGGGCGATCTCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTG
GTGGTGCTGTGGCAGGTGGTTCTGCTGCTGCTGCTGCTGCTGTTGCTGCT
GCTGGTGGTGCGGCGAGTGTGCCGCTGGGTGGTGGTGGGCGGGCAGGCCG
GCGGCGGCCAGGAACTGCGTGTGGTGATATGGCAGGAAGCCCTGGGCATG
ACTGCTGCTGAAGGATCGCAGCAGATGAAGATTCTCGGCGGGCGTGTTGG
GCGGCGACTGGCTGTCCTCCTTCTTGAGACTGAGATTCTCCGGCGTGGCC
TCATCCGGCGCCGAATCCACGTCCAGATCCGATTCCGGCGAGCTGGGCGG
TCCAGTGCGGGCGGGCGACAAGCTGGCGGTCAGATTGAACAGTCCGGCGA
CCTTGGGCCGGGGACTACTCGGCGATCCGGACTCGGAGCCCGTGTCCTGG
TCGGTCTCGTTCGACAGGGCTGCTCCGCGCTTGGACACAGGACTCTCATC
CAGCTCGGTTCTGGTGGG
MXO02411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15504-PA | 1533 | dmrt99B-RA | 631..1530 | 918..19 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dmrt99B-RA | 2350 | CG15504-RA | 847..1746 | 918..19 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29695552..29696421 | 888..19 | 4350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:13 has no hits.
MXO02411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:07 Download gff for
MXO02411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15504-PA | 631..1533 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:17 Download gff for
MXO02411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15504-PA | 631..1533 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:58 Download gff for
MXO02411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dmrt99B-RA | 847..1752 | 13..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:13 Download gff for
MXO02411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dmrt99B-RA | 847..1752 | 13..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:13 Download gff for
MXO02411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29693807..29693837 | 888..918 | 100 | -> | Minus |
| 3R | 29695553..29696427 | 13..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:58 Download gff for
MXO02411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25519529..25519559 | 888..918 | 100 | -> | Minus |
| arm_3R | 25521275..25522149 | 13..887 | 99 | | Minus |
MXO02411.5prime Sequence
880 bp (794 high quality bases) assembled on 2006-12-21
> MXO02411.5prime
CAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATCTGATGTCC
CAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTGCGAGCCGC
CTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAGGAACCACG
GAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCTGGCGGGAT
TGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGGGTTATGGC
TGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAACGAGGCCC
GCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGAATGGCAGC
GACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGCAGCGGCGG
CTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGGCGGGATTC
CCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCAATCATCAC
CAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCACCTTAGCCA
CCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGACACGGATG
GACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCACCAGAACC
GAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTGTCGAACGA
GACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAGTCCCCGGC
CCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCGCCCGCCCGC
ACTGGACCGCCCAGCTCGCCGGAATCGGATCTGGACGTGGATTCGGCGCC
GGATGAGGCCACGCCGGAGAATCTCAGTCT
MXO02411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15504-PA | 1533 | dmrt99B-RA | 1..872 | 9..880 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dmrt99B-RA | 2350 | CG15504-RA | 211..1088 | 3..880 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29693423..29693837 | 255..669 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 29695552..29695763 | 669..880 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 29692801..29692955 | 3..157 | 760 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29693037..29693143 | 155..261 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5815..5869 | 222..168 | 122 | 69.1 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7270..7324 | 222..168 | 122 | 69.1 | Minus |
MXO02411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:09 Download gff for
MXO02411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15504-PA | 1..872 | 9..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:17 Download gff for
MXO02411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15504-PA | 1..872 | 9..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:04 Download gff for
MXO02411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dmrt99B-RA | 208..1088 | 1..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:11 Download gff for
MXO02411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dmrt99B-RA | 208..1088 | 1..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:11 Download gff for
MXO02411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29693426..29693837 | 258..669 | 100 | -> | Plus |
| 3R | 29695553..29695763 | 670..880 | 100 | | Plus |
| 3R | 29692798..29692953 | 1..155 | 98 | -> | Plus |
| 3R | 29693038..29693139 | 156..257 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:04 Download gff for
MXO02411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25518520..25518675 | 1..155 | 98 | -> | Plus |
| arm_3R | 25518760..25518861 | 156..257 | 100 | -> | Plus |
| arm_3R | 25519148..25519559 | 258..669 | 100 | -> | Plus |
| arm_3R | 25521275..25521485 | 670..880 | 100 | | Plus |
