Clone MXO02412 Report

Search the DGRC for MXO02412

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:12
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG15710-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02412.3prime Sequence

819 bp (786 high quality bases) assembled on 2006-12-21

> MXO02412.3prime
ATGGTCTAGAAAGCTTGCATTATTAAAACTTTGCACAACTTCTGTAAATG
TTACCTCGCTGACCTCGGTGATTTCAATCTCACGCTTTCTTTTGCATTTA
TCCGGCATCTGGCAAGTTTTCAGATGACGGTGAAGGAAACCCTCATATTT
GTACTTTTTCCCACAACGATCACAGATTAATTCGGGCCTTCTCTTCCCTA
AGATCTTTTTCTCCTCCTCCTGGGCCTTCAGCCTTACGATACATGCGTCG
CACGCGTATCGACGGGTCACTTGGCCAGGCTTAAAGCAGGCCTTGAACTC
CGTGCGACAAAAGACGCAATTGAAGGTCTTGGTGATGGTGTACGCCCCTT
CGTAGGATTCATCCGTGGACTCGCACGGTATCAGATGGCTCTCCAAATGG
GTGCGATACTCCAGATCCGTCCCGAACTTGACATGGCAGGATGCACAGGT
GCGATTCATTGATGGGCTTCCATGCAGGAGCCTGTGGCCGATCAGGGCAT
CCACCGAGGAGAAGATTTTCTTGCAAATGTTGCACTGATGCTGGGACACG
TCCGGCACATCCTTCATCATGCGTGCCAAGCGTCTTTGGCAGGCCATCAG
ATGGACCTTGTAGGCACCGGCCGTGCGAATCACATTAGAGCAAAGCGGAC
AGTGGAAGCGTTGCGTGTTGTCCTCCAGGAAAACTTTCTCCTCTTTTATC
GGCTGCAAACAGGGCGCCACGTACACCTTGGTAACAATACCATTATCCTC
CTGAATCGACAGTAGAGTAGCTGGTTCCAGCTCCTCGGAAATCCAGTTGC
CAGCACTTGTCATGTCGAC

MXO02412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-PA 798 CG15710-RA 1..795 813..19 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-RA 914 CG15710-RA 62..856 813..19 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16347672..16348466 19..813 3975 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:24:55 has no hits.

MXO02412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:11 Download gff for MXO02412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 16..813 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:17 Download gff for MXO02412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 16..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:26 Download gff for MXO02412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 57..856 19..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:11 Download gff for MXO02412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 57..856 19..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:11 Download gff for MXO02412.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16347672..16348471 19..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:26 Download gff for MXO02412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12235177..12235976 19..819 99   Plus

MXO02412.5prime Sequence

818 bp (730 high quality bases) assembled on 2006-12-21

> MXO02412.5prime
CAGTCGACATGACAAGTGCTGGCAACTGGATTTCCGAGGAGCTGGAACCA
GCTACTCTACTGTCGATTCAGGAGGATAATGGTATTGTTACCAAGGTGTA
CGTGGCGCCCTGTTTGCAGCCGATAAAAGAGGAGAAAGTTTTCCTGGAGG
ACAACACGCAACGCTTCCACTGTCCGCTTTGCTCTAATGTGATTCGCACG
GCCGGTGCCTACAAGGTCCATCTGATGGCCTGCCAAAGACGCTTGGCACG
CATGATGAAGGATGTGCCGGACGTGTCCCAGCATCAGTGCAACATTTGCA
AGAAAATCTTCTCCTCGGTGGATGCCCTGATCGGCCACAGGCTCCTGCAT
GGAAGCCCATCAATGAATCGCACCTGTGCATCCTGCCATGTCAAGTTCGG
GACGGATCTGGAGTATCGCACCCATTTGGAGAGCCATCTGATACCGTGCG
AGTCCACGGATGAATCCTACGAAGGGGCGTACACCATCACCAAGACCTTC
AATTGCGTCTTTTGTCGCACGGAGTTCAAGGCCTGCTTTAAGCCTGGCCA
AGTGACCCGTCGATACGCGTGCGACGCATGTATCGTAAGGCTGAAGGCCC
AGGAGGAGGAGAAAAAGATCTTAGGGAAGAGAAGGCCCGAATTAATCTGT
GATCGTTGTGGGAAAAAGTACAAATATGAGGGTTTCCTTCACCGTCATCT
GAAAACTTGCCAGATGCCGGATAAATGCAAAAGAAAGCGTGAGATTGAAA
TCACCGAGGTCAGCGAGGTAACATTTACAGAAGTTGTGCAAAGTTTAATA
ATGCAAGCTTTCTAGACC

MXO02412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-PA 798 CG15710-RA 1..788 9..796 3940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-RA 914 CG15710-RA 62..856 9..802 3950 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16347679..16348466 796..9 3940 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:51:37 has no hits.

MXO02412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:13 Download gff for MXO02412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 9..805 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:18 Download gff for MXO02412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 9..805 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:57 Download gff for MXO02412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 56..856 2..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:48 Download gff for MXO02412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 56..856 2..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:48 Download gff for MXO02412.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16347672..16348472 2..802 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:57 Download gff for MXO02412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12235177..12235977 2..802 99   Minus