MXO02413.3prime Sequence
829 bp (666 high quality bases) assembled on 2006-12-21
> MXO02413.3prime
ATGGTCTAGAAAGCTTGCTTTGAGACCCACATACCCAATGTTCATGGCTA
CAAAATAGTTAGTGTCCGGCGAATTGGTAGCACCGGTTAGATTGTTACCA
ATGCCAGCAGTGCGCTGCGGTCGTCTTTTGTAAAACTCAATCTCATCGAC
AGTCCAAACTGCTCCTTTCACATTCTCAACCCGCATAAAGCACTTATGAA
GGGACAGATTGTGCCGGACTGCGTTCTTCCACGTAGCTGCGTTGCGCCGG
AAGTAGCAAAATGTGTTTTGGAACCAGTTGTAGATTTCGTTTAGGGTTAA
CTGCTTGTCAGGGGAGTCAATTATAGCCTGTCTTATGAGGGAAGCATAAG
TAAAAGGCGGTCGTACATCAGCATTCTTATAAAACTCTCTGTTTCGATGG
ATTTCCTGTTGCACATCAAGACCTGCTCTTTCAAGCATATAGGGTAATCC
CCCATTTATGGAAAATGTATTTTTGTCGTGGTTTCTCTTTTTGATCGAGC
ACAAGTTGGTGGAATTAACCATTGGAAGATTCAGAGGACTCGGTGAATTT
GTTTGTCGGATGGGTCGGCCTATGCTATTTACGGTAAGCGGACTCCGGCA
AAACTTTCCCTCTCTTCCGGGCACGTCCTTCCTGTCGATTTTGGTGGGAG
ACAAAAGCTGCTTGGACAAATACAAGTGATGCATCATTGCCTGCAAGCGA
TCTCGTTCTTTTTGCAGGTGGGATTCCAGCTGGGAGACAACTTGCATTTG
AACCCGTGCCTGTGCTGTTGATCGATCGTCCAACCATGTTCCGTATTCAG
ATGCTTGACAAACAATGTGATGTCTTCCA
MXO02413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16899-PA | 1074 | CG16899-RA | 762..1071 | 328..19 | 1550 | 100 | Minus |
CG16899-PA | 1074 | CG16899-RA | 562..719 | 783..626 | 790 | 100 | Minus |
CG16899-PA | 1074 | CG16899-RA | 717..762 | 450..405 | 230 | 100 | Minus |
CG16899-PA | 1074 | CG16899-RA | 515..562 | 829..782 | 215 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RD | 2832 | CG43067-RD | 1761..2572 | 829..19 | 4020 | 99.8 | Minus |
FoxP-RC | 3359 | CG43067-RC | 1761..2367 | 829..224 | 2995 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9727411..9727619 | 19..227 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 9728424..9728605 | 449..630 | 910 | 100 | Plus |
3R | 32079331 | 3R | 9728658..9728836 | 627..804 | 845 | 99.4 | Plus |
3R | 32079331 | 3R | 9727990..9728093 | 226..329 | 520 | 100 | Plus |
3R | 32079331 | 3R | 9728158..9728236 | 327..405 | 395 | 100 | Plus |
3R | 32079331 | 3R | 9728321..9728366 | 405..450 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:13 has no hits.
MXO02413.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:14 Download gff for
MXO02413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 516..719 | 626..828 | 99 | | Minus |
CG16899-PA | 762..1074 | 18..328 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:19 Download gff for
MXO02413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 762..1074 | 18..328 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:19 Download gff for
MXO02413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 526..1342 | 10..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:49 Download gff for
MXO02413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1762..2578 | 10..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:49 Download gff for
MXO02413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9727405..9727617 | 10..225 | 98 | <- | Plus |
3R | 9727990..9728091 | 226..327 | 100 | <- | Plus |
3R | 9728159..9728235 | 328..404 | 100 | <- | Plus |
3R | 9728321..9728365 | 405..449 | 100 | <- | Plus |
3R | 9728425..9728602 | 450..627 | 100 | <- | Plus |
3R | 9728659..9728836 | 628..804 | 99 | <- | Plus |
3R | 9728895..9728918 | 805..828 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:19 Download gff for
MXO02413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5554617..5554640 | 805..828 | 95 | | Plus |
arm_3R | 5553127..5553339 | 10..225 | 98 | <- | Plus |
arm_3R | 5553712..5553813 | 226..327 | 100 | <- | Plus |
arm_3R | 5553881..5553957 | 328..404 | 100 | <- | Plus |
arm_3R | 5554043..5554087 | 405..449 | 100 | <- | Plus |
arm_3R | 5554147..5554324 | 450..627 | 100 | <- | Plus |
arm_3R | 5554381..5554558 | 628..804 | 99 | <- | Plus |
MXO02413.5prime Sequence
824 bp (546 high quality bases) assembled on 2006-12-21
> MXO02413.5prime
CAGTCGACATGCATCGGATACTTGACGACGAGTATTCCGAGGATGCCAAG
GAATCGGACTTTAGGAGTTCGATTCAGAAGGAGATATCGGTGAAGTCGAG
ACACCAAATTTCCATACCAGACGTATGCTCAGATGCTGTTAAGAACAATT
GTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTGCCTCACAT
GTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCCTCAACGGC
GGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGGTCAGCATA
TGATGGCTCCCGTTCCCGATCTGGGTGTCTACAATGTGCCCGAGTTCATA
TCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTCTTGCGGTC
GAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCACGATGAGT
TCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCATATGCCGT
TGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTTGTCAAGCA
TCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACAGGCACGGG
TTCAAATGCATGTTGTCTCCCAGCTGGAATCCCACCTGCAAAAAGAACGA
GATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAGCAGCTTTT
GTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGAGGGAAAGT
TTTGCCGGAGTCCGCTTACCGTATATAGCATAGGCCGACCCATCCGACAA
ACAAATTCGCCGAGTCCTCTGAAT
MXO02413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16899-PA | 1074 | CG16899-RA | 1..719 | 9..727 | 3445 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RC | 3359 | CG43067-RC | 1245..2062 | 7..824 | 3970 | 99 | Plus |
FoxP-RD | 2832 | CG43067-RD | 1245..2062 | 7..824 | 3970 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9728894..9729435 | 548..7 | 2635 | 99.1 | Minus |
3R | 32079331 | 3R | 9728658..9728836 | 726..548 | 880 | 99.4 | Minus |
3R | 32079331 | 3R | 9728504..9728605 | 824..723 | 480 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:32 has no hits.
MXO02413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:17 Download gff for
MXO02413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 1..725 | 9..734 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:19 Download gff for
MXO02413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 1..725 | 9..734 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:35 Download gff for
MXO02413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 9..826 | 7..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:07 Download gff for
MXO02413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1245..2062 | 7..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:07 Download gff for
MXO02413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9728504..9728602 | 726..824 | 97 | <- | Minus |
3R | 9728659..9728836 | 548..725 | 99 | <- | Minus |
3R | 9728895..9729435 | 7..547 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:35 Download gff for
MXO02413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5554226..5554324 | 726..824 | 97 | <- | Minus |
arm_3R | 5554381..5554558 | 548..725 | 99 | <- | Minus |
arm_3R | 5554617..5555157 | 7..547 | 99 | | Minus |