Clone MXO02413 Report

Search the DGRC for MXO02413

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:13
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptfd85E-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02413.3prime Sequence

829 bp (666 high quality bases) assembled on 2006-12-21

> MXO02413.3prime
ATGGTCTAGAAAGCTTGCTTTGAGACCCACATACCCAATGTTCATGGCTA
CAAAATAGTTAGTGTCCGGCGAATTGGTAGCACCGGTTAGATTGTTACCA
ATGCCAGCAGTGCGCTGCGGTCGTCTTTTGTAAAACTCAATCTCATCGAC
AGTCCAAACTGCTCCTTTCACATTCTCAACCCGCATAAAGCACTTATGAA
GGGACAGATTGTGCCGGACTGCGTTCTTCCACGTAGCTGCGTTGCGCCGG
AAGTAGCAAAATGTGTTTTGGAACCAGTTGTAGATTTCGTTTAGGGTTAA
CTGCTTGTCAGGGGAGTCAATTATAGCCTGTCTTATGAGGGAAGCATAAG
TAAAAGGCGGTCGTACATCAGCATTCTTATAAAACTCTCTGTTTCGATGG
ATTTCCTGTTGCACATCAAGACCTGCTCTTTCAAGCATATAGGGTAATCC
CCCATTTATGGAAAATGTATTTTTGTCGTGGTTTCTCTTTTTGATCGAGC
ACAAGTTGGTGGAATTAACCATTGGAAGATTCAGAGGACTCGGTGAATTT
GTTTGTCGGATGGGTCGGCCTATGCTATTTACGGTAAGCGGACTCCGGCA
AAACTTTCCCTCTCTTCCGGGCACGTCCTTCCTGTCGATTTTGGTGGGAG
ACAAAAGCTGCTTGGACAAATACAAGTGATGCATCATTGCCTGCAAGCGA
TCTCGTTCTTTTTGCAGGTGGGATTCCAGCTGGGAGACAACTTGCATTTG
AACCCGTGCCTGTGCTGTTGATCGATCGTCCAACCATGTTCCGTATTCAG
ATGCTTGACAAACAATGTGATGTCTTCCA

MXO02413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG16899-PA 1074 CG16899-RA 762..1071 328..19 1550 100 Minus
CG16899-PA 1074 CG16899-RA 562..719 783..626 790 100 Minus
CG16899-PA 1074 CG16899-RA 717..762 450..405 230 100 Minus
CG16899-PA 1074 CG16899-RA 515..562 829..782 215 97.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RD 2832 CG43067-RD 1761..2572 829..19 4020 99.8 Minus
FoxP-RC 3359 CG43067-RC 1761..2367 829..224 2995 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9727411..9727619 19..227 1045 100 Plus
3R 32079331 3R 9728424..9728605 449..630 910 100 Plus
3R 32079331 3R 9728658..9728836 627..804 845 99.4 Plus
3R 32079331 3R 9727990..9728093 226..329 520 100 Plus
3R 32079331 3R 9728158..9728236 327..405 395 100 Plus
3R 32079331 3R 9728321..9728366 405..450 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:00:13 has no hits.

MXO02413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:14 Download gff for MXO02413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 516..719 626..828 99   Minus
CG16899-PA 762..1074 18..328 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:19 Download gff for MXO02413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 762..1074 18..328 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:19 Download gff for MXO02413.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 526..1342 10..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:49 Download gff for MXO02413.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1762..2578 10..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:49 Download gff for MXO02413.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9727405..9727617 10..225 98 <- Plus
3R 9727990..9728091 226..327 100 <- Plus
3R 9728159..9728235 328..404 100 <- Plus
3R 9728321..9728365 405..449 100 <- Plus
3R 9728425..9728602 450..627 100 <- Plus
3R 9728659..9728836 628..804 99 <- Plus
3R 9728895..9728918 805..828 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:19 Download gff for MXO02413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5554617..5554640 805..828 95   Plus
arm_3R 5553127..5553339 10..225 98 <- Plus
arm_3R 5553712..5553813 226..327 100 <- Plus
arm_3R 5553881..5553957 328..404 100 <- Plus
arm_3R 5554043..5554087 405..449 100 <- Plus
arm_3R 5554147..5554324 450..627 100 <- Plus
arm_3R 5554381..5554558 628..804 99 <- Plus

MXO02413.5prime Sequence

824 bp (546 high quality bases) assembled on 2006-12-21

> MXO02413.5prime
CAGTCGACATGCATCGGATACTTGACGACGAGTATTCCGAGGATGCCAAG
GAATCGGACTTTAGGAGTTCGATTCAGAAGGAGATATCGGTGAAGTCGAG
ACACCAAATTTCCATACCAGACGTATGCTCAGATGCTGTTAAGAACAATT
GTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTGCCTCACAT
GTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCCTCAACGGC
GGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGGTCAGCATA
TGATGGCTCCCGTTCCCGATCTGGGTGTCTACAATGTGCCCGAGTTCATA
TCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTCTTGCGGTC
GAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCACGATGAGT
TCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCATATGCCGT
TGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTTGTCAAGCA
TCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACAGGCACGGG
TTCAAATGCATGTTGTCTCCCAGCTGGAATCCCACCTGCAAAAAGAACGA
GATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAGCAGCTTTT
GTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGAGGGAAAGT
TTTGCCGGAGTCCGCTTACCGTATATAGCATAGGCCGACCCATCCGACAA
ACAAATTCGCCGAGTCCTCTGAAT

MXO02413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16899-PA 1074 CG16899-RA 1..719 9..727 3445 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RC 3359 CG43067-RC 1245..2062 7..824 3970 99 Plus
FoxP-RD 2832 CG43067-RD 1245..2062 7..824 3970 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9728894..9729435 548..7 2635 99.1 Minus
3R 32079331 3R 9728658..9728836 726..548 880 99.4 Minus
3R 32079331 3R 9728504..9728605 824..723 480 98 Minus
Blast to na_te.dros performed on 2014-11-28 20:53:32 has no hits.

MXO02413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:17 Download gff for MXO02413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 1..725 9..734 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:19 Download gff for MXO02413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 1..725 9..734 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:35 Download gff for MXO02413.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 9..826 7..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:07 Download gff for MXO02413.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1245..2062 7..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:07 Download gff for MXO02413.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9728504..9728602 726..824 97 <- Minus
3R 9728659..9728836 548..725 99 <- Minus
3R 9728895..9729435 7..547 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:35 Download gff for MXO02413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5554226..5554324 726..824 97 <- Minus
arm_3R 5554381..5554558 548..725 99 <- Minus
arm_3R 5554617..5555157 7..547 99   Minus