MXO02414.3prime Sequence
898 bp (857 high quality bases) assembled on 2006-12-21
> MXO02414.3prime
ATGGTCTAGAAAGCTTGCTGCATTGTCCAGCGCGATGAAGTAGGAAATAT
CCTCCGGACTGTCTTCGGTGGTCAGGTACACGATCTCCTCGTAAACGTTT
TCTTCGGCAGTTGTATATTCTATCATTTCAAAGCCGGGATCTATTTGAAC
CACCTCGTCGATCTCCACTAGATTGATCTCTTCCAGTCCGTTTTGCTTAT
CTATATCCTGTATATCCTCCACAACATCTGGCTCTTCCATAACATCCATA
TCAAGCTCCTCCACAAAATTTCTCTCCTCTCTGTGATCAATCTCCTCCAG
CTCATTTTCCGCTTCCAAGTATTCTACTGGCTCAAGAGCTTCAGTTTCCT
CCAGACCATCAAGGTCAGCTTGAATCTTGGCCAGATGCCTTGCCGATCGC
ATGTGCCGAACGAAGCAGAATCTCCTGGCCGTTCTGTATTCGCAGGGCTT
GCACTCCAGGGTGCACCTGCACTCCTTCTTGTAGGCGAGGTATTCGTCCT
CGGTCTCCCCAGACTCCCCAGATAGCTCCACCATCTGTTCCTGCTCCTGG
GGCAGATACTGTATGTATTCATTAGCCTCCAGCTGGCTTTGCACGACCTC
GATGTTCGCCTGGCTTTTTGCTTGCATCTCGAATTGAGATTTTCGAGTGG
TGCTGTAGTCACACGGCGTGCACGTGGTCAGGATGTCTTCCGTGTATCGT
GTTTTCTCCGCATCCGCGGGCGCTGGCTCCTCTACTCTTTTTATGCGTTT
TACCGCCGGTTCCGCCCTCTCGGCCTCGTCCATCAGCTTCTCGCACTCCT
CCTGCTCCTTCATTATGTGGCGCCTCGACTCCTTGTGCCGGTCGAAGCAA
TACCGTTTTGGCGGTCTTGTAGCCGCAGACGTTGCACGAGAACAGTGA
MXO02414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17186-PA | 1146 | CG17186-RA | 304..1143 | 858..19 | 4200 | 100 | Minus |
CG17186-PA | 1146 | CG17186-RA | 265..306 | 898..857 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17186-RA | 1482 | CG17186-RA | 362..1240 | 898..19 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19876216..19877094 | 19..898 | 4350 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:24 has no hits.
MXO02414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:18 Download gff for
MXO02414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-PA | 266..1146 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:19 Download gff for
MXO02414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-PA | 266..1146 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:28 Download gff for
MXO02414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 363..1247 | 10..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:55 Download gff for
MXO02414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 363..1247 | 10..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:55 Download gff for
MXO02414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19876209..19877093 | 10..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:28 Download gff for
MXO02414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15701931..15702815 | 10..897 | 99 | | Plus |
MXO02414.5prime Sequence
876 bp (816 high quality bases) assembled on 2006-12-21
> MXO02414.5prime
CAGTCGACATGTCGCAGACATGCCAGAGAACGGAAACACTGACGATTGAG
GCTCTAGATTTCATCTACGAGGACGAAATGGAATACTTGCACCTAAAACA
AGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAGATAAAGCGACTGA
CTTGCAACATAAACGGCTGCACTTACTCCACGGACCGGAGAAGAGACTTG
AGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGGAGTCCTGCTCTGA
CTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGCAACGTCTGCGGCT
ACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAAGGAGTCGAGGCGC
CACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGATGGACGAGGCCGA
GAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTAGAGGAGCCAGCGC
CCGCGGATGCGGAGAAAACACGATACACGGAAGACATCCTGACCACGTGC
ACGCCGTGTGACTACAGCACCACTCGAAAATCTCAATTCGAGATGCAAGC
AAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAGCTGGAGGCTAATG
AATACATACAGTATCTGCCCCAGGAGCAGGAACAGATGGTGGAGCTATCT
GGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCTACAAGAAGGAGTG
CAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGAACGGCCAGGAGAT
TCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCTGGCCAAGATTCAA
GCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTGAGCCAGTAGAATA
CTTGGAAGCGGAAAATGAGCTGGAGG
MXO02414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17186-PA | 1146 | CG17186-RA | 1..868 | 9..876 | 4315 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17186-RA | 1482 | CG17186-RA | 98..965 | 9..876 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19876491..19877282 | 876..85 | 3960 | 100 | Minus |
3R | 32079331 | 3R | 19877342..19877417 | 84..9 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:45 has no hits.
MXO02414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:20 Download gff for
MXO02414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-PA | 1..868 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:20 Download gff for
MXO02414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-PA | 1..868 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:14 Download gff for
MXO02414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 98..965 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:29 Download gff for
MXO02414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 98..965 | 9..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:29 Download gff for
MXO02414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19876491..19877282 | 85..876 | 100 | <- | Minus |
3R | 19877342..19877417 | 9..84 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:14 Download gff for
MXO02414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15702213..15703004 | 85..876 | 100 | <- | Minus |
arm_3R | 15703064..15703139 | 9..84 | 98 | | Minus |