Clone MXO02414 Report

Search the DGRC for MXO02414

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:14
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17186-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02414.3prime Sequence

898 bp (857 high quality bases) assembled on 2006-12-21

> MXO02414.3prime
ATGGTCTAGAAAGCTTGCTGCATTGTCCAGCGCGATGAAGTAGGAAATAT
CCTCCGGACTGTCTTCGGTGGTCAGGTACACGATCTCCTCGTAAACGTTT
TCTTCGGCAGTTGTATATTCTATCATTTCAAAGCCGGGATCTATTTGAAC
CACCTCGTCGATCTCCACTAGATTGATCTCTTCCAGTCCGTTTTGCTTAT
CTATATCCTGTATATCCTCCACAACATCTGGCTCTTCCATAACATCCATA
TCAAGCTCCTCCACAAAATTTCTCTCCTCTCTGTGATCAATCTCCTCCAG
CTCATTTTCCGCTTCCAAGTATTCTACTGGCTCAAGAGCTTCAGTTTCCT
CCAGACCATCAAGGTCAGCTTGAATCTTGGCCAGATGCCTTGCCGATCGC
ATGTGCCGAACGAAGCAGAATCTCCTGGCCGTTCTGTATTCGCAGGGCTT
GCACTCCAGGGTGCACCTGCACTCCTTCTTGTAGGCGAGGTATTCGTCCT
CGGTCTCCCCAGACTCCCCAGATAGCTCCACCATCTGTTCCTGCTCCTGG
GGCAGATACTGTATGTATTCATTAGCCTCCAGCTGGCTTTGCACGACCTC
GATGTTCGCCTGGCTTTTTGCTTGCATCTCGAATTGAGATTTTCGAGTGG
TGCTGTAGTCACACGGCGTGCACGTGGTCAGGATGTCTTCCGTGTATCGT
GTTTTCTCCGCATCCGCGGGCGCTGGCTCCTCTACTCTTTTTATGCGTTT
TACCGCCGGTTCCGCCCTCTCGGCCTCGTCCATCAGCTTCTCGCACTCCT
CCTGCTCCTTCATTATGTGGCGCCTCGACTCCTTGTGCCGGTCGAAGCAA
TACCGTTTTGGCGGTCTTGTAGCCGCAGACGTTGCACGAGAACAGTGA

MXO02414.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17186-PA 1146 CG17186-RA 304..1143 858..19 4200 100 Minus
CG17186-PA 1146 CG17186-RA 265..306 898..857 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17186-RA 1482 CG17186-RA 362..1240 898..19 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19876216..19877094 19..898 4350 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 20:00:24 has no hits.

MXO02414.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:18 Download gff for MXO02414.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-PA 266..1146 18..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:19 Download gff for MXO02414.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-PA 266..1146 18..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:28 Download gff for MXO02414.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 363..1247 10..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:55 Download gff for MXO02414.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 363..1247 10..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:55 Download gff for MXO02414.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19876209..19877093 10..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:28 Download gff for MXO02414.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15701931..15702815 10..897 99   Plus

MXO02414.5prime Sequence

876 bp (816 high quality bases) assembled on 2006-12-21

> MXO02414.5prime
CAGTCGACATGTCGCAGACATGCCAGAGAACGGAAACACTGACGATTGAG
GCTCTAGATTTCATCTACGAGGACGAAATGGAATACTTGCACCTAAAACA
AGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAGATAAAGCGACTGA
CTTGCAACATAAACGGCTGCACTTACTCCACGGACCGGAGAAGAGACTTG
AGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGGAGTCCTGCTCTGA
CTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGCAACGTCTGCGGCT
ACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAAGGAGTCGAGGCGC
CACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGATGGACGAGGCCGA
GAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTAGAGGAGCCAGCGC
CCGCGGATGCGGAGAAAACACGATACACGGAAGACATCCTGACCACGTGC
ACGCCGTGTGACTACAGCACCACTCGAAAATCTCAATTCGAGATGCAAGC
AAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAGCTGGAGGCTAATG
AATACATACAGTATCTGCCCCAGGAGCAGGAACAGATGGTGGAGCTATCT
GGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCTACAAGAAGGAGTG
CAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGAACGGCCAGGAGAT
TCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCTGGCCAAGATTCAA
GCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTGAGCCAGTAGAATA
CTTGGAAGCGGAAAATGAGCTGGAGG

MXO02414.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17186-PA 1146 CG17186-RA 1..868 9..876 4315 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17186-RA 1482 CG17186-RA 98..965 9..876 4325 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19876491..19877282 876..85 3960 100 Minus
3R 32079331 3R 19877342..19877417 84..9 365 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 18:36:45 has no hits.

MXO02414.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:20 Download gff for MXO02414.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-PA 1..868 9..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:20 Download gff for MXO02414.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-PA 1..868 9..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:14 Download gff for MXO02414.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 98..965 9..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:29 Download gff for MXO02414.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 98..965 9..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:29 Download gff for MXO02414.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19876491..19877282 85..876 100 <- Minus
3R 19877342..19877417 9..84 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:14 Download gff for MXO02414.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15702213..15703004 85..876 100 <- Minus
arm_3R 15703064..15703139 9..84 98   Minus