Clone MXO02415 Report

Search the DGRC for MXO02415

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:15
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17195-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02415.5prime Sequence

873 bp (825 high quality bases) assembled on 2006-12-21

> MXO02415.5prime
CAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTGCCAATCGC
TACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATAGTTTTCGT
CCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTACATTGCGC
CCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATATTGGTCACC
TTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTATATGACTAG
CTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAATCCAGAGG
ATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGAGATCGCCA
CGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGACGGGACCA
CCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCAACGCTTTT
TCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAAGCTTTGCA
ACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATGAGTCTCTC
GTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAATTATACTG
GCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCGCCAGCTAT
ATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGCCAAAACTC
TACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTTCCGAAAGA
ACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTATATCGCCC
TTGCTGAAGAGTCCTTTGCCCCATGACGGTGCACATTGGCAGATGAAGCA
GTCTCACGCAAGCTTTCTAGACC

MXO02415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 852 CG17195-RA 1..849 9..857 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 18..866 9..857 4245 100 Plus
CG17196-RC 881 CG17196-RC 257..426 303..472 325 80.1 Plus
CG17196-RB 875 CG17196-RB 251..420 303..472 325 80.1 Plus
CG17196-RC 881 CG17196-RC 587..759 654..826 295 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776333..25777181 857..9 4245 100 Minus
3R 32079331 3R 25775743..25775912 472..303 310 78.8 Minus
3R 32079331 3R 25775410..25775582 826..654 295 78 Minus
3R 32079331 3R 25774821..25774936 463..348 220 79.3 Minus
Blast to na_te.dros performed on 2014-11-28 23:11:43 has no hits.

MXO02415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:23 Download gff for MXO02415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 9..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:21 Download gff for MXO02415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 9..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:11 Download gff for MXO02415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 9..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:49 Download gff for MXO02415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 9..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:49 Download gff for MXO02415.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25776327..25777181 9..865 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:11 Download gff for MXO02415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602049..21602903 9..865 99   Minus

MXO02415.3prime Sequence

873 bp (752 high quality bases) assembled on 2006-12-21

> MXO02415.3prime
ATGGTCTAGAAAGCTTGCGTGAGACTGCTTCATCTGCCAATGTGCACCGT
CATGGGGCAAAGGACTCTTCAGCAAGGGCGATATAAAAGTCCAAAGTCCT
CGTTGGCCCATTATTGTCTGGCAGTTCTTTCGGAAACCCAGATCGTAGGT
GCAATCAAAAATATTATAGTAGGTAGAGTTTTGGCTTAAAATCTGCATTT
GATATGCCAACATAAAGGCAGGCATATAGCTGGCGCTTATATTCAAGAGG
AAGGCAATGGTCTCAAAAGTATTGCCAGTATAATTTTGGAAAAAAGTCCT
AGTTATTAAATTAAAAATCACAGACGAGAGACTCATGAAGTTACCGCCAT
TCTGCAGGATAAACATACAAAATGTTGCAAAGCTTGTGACTAAGCCGAGC
GTTAAATAAAATGTGAACCAGAAGAAAAAGCGTTGATTATTGTGTCCAAT
GCAAGTGCCCGTGAATATACAGTGGTGGTCCCGTCTCAAAATGCAGGTGT
TGCACAAAACGCAGTGCCAGGATCGTGGCGATCTCAGCTTTTTACACGAT
TCGCAATAGTGCCACAGGGGCTCATCCTCTGGATTCGGGCATCGGGAGTC
CTTGGACAAGGTGTTTACCGATGAGCTAGTCATATAGCAGGCCAGCATGT
TACCAAGTATGTTGTGCGTTATGAAGGTGACCAATATCCAGTAGAGCTTG
TAAGCAATGTCGCCAAACACTTTGGGCGCAATGTAAAACATCTGCAGTGA
GAAGAAGAAAGCTGTGCTGCACAGGACGAAAACTATCGAAAGTGGATGCA
CTATCCTCACAAAGTTCTTCGGGTAGCGATTGGGCAAGTAATGGCAAAAT
CTATTCACGTAGCACATGTCGAC

MXO02415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 852 CG17195-RA 1..849 867..19 4195 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 18..866 867..19 4215 99.8 Minus
CG17196-RC 881 CG17196-RC 257..426 573..404 325 80.1 Minus
CG17196-RB 875 CG17196-RB 251..420 573..404 325 80.1 Minus
CG17196-RC 881 CG17196-RC 587..759 222..50 295 78.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776333..25777181 19..867 4215 99.8 Plus
3R 32079331 3R 25775743..25775912 404..573 310 78.8 Plus
3R 32079331 3R 25775410..25775582 50..222 295 78 Plus
3R 32079331 3R 25774821..25774936 413..528 220 79.3 Plus
Blast to na_te.dros performed on 2014-11-28 20:52:15 has no hits.

MXO02415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:22 Download gff for MXO02415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 15..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:20 Download gff for MXO02415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 15..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:26 Download gff for MXO02415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 11..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:11 Download gff for MXO02415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 11..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:11 Download gff for MXO02415.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25776327..25777181 11..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:26 Download gff for MXO02415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602049..21602903 11..867 99   Plus