Clone Sequence Records
MXO02415.5prime Sequence
873 bp (825 high quality bases) assembled on 2006-12-21
> MXO02415.5prime
CAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTGCCAATCGC
TACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATAGTTTTCGT
CCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTACATTGCGC
CCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATATTGGTCACC
TTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTATATGACTAG
CTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAATCCAGAGG
ATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGAGATCGCCA
CGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGACGGGACCA
CCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCAACGCTTTT
TCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAAGCTTTGCA
ACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATGAGTCTCTC
GTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAATTATACTG
GCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCGCCAGCTAT
ATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGCCAAAACTC
TACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTTCCGAAAGA
ACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTATATCGCCC
TTGCTGAAGAGTCCTTTGCCCCATGACGGTGCACATTGGCAGATGAAGCA
GTCTCACGCAAGCTTTCTAGACC
MXO02415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 852 | CG17195-RA | 1..849 | 9..857 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 18..866 | 9..857 | 4245 | 100 | Plus |
CG17196-RC | 881 | CG17196-RC | 257..426 | 303..472 | 325 | 80.1 | Plus |
CG17196-RB | 875 | CG17196-RB | 251..420 | 303..472 | 325 | 80.1 | Plus |
CG17196-RC | 881 | CG17196-RC | 587..759 | 654..826 | 295 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776333..25777181 | 857..9 | 4245 | 100 | Minus |
3R | 32079331 | 3R | 25775743..25775912 | 472..303 | 310 | 78.8 | Minus |
3R | 32079331 | 3R | 25775410..25775582 | 826..654 | 295 | 78 | Minus |
3R | 32079331 | 3R | 25774821..25774936 | 463..348 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:43 has no hits.
MXO02415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:23 Download gff for
MXO02415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:21 Download gff for
MXO02415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:11 Download gff for
MXO02415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:49 Download gff for
MXO02415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:49 Download gff for
MXO02415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776327..25777181 | 9..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:11 Download gff for
MXO02415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602049..21602903 | 9..865 | 99 | | Minus |
MXO02415.3prime Sequence
873 bp (752 high quality bases) assembled on 2006-12-21
> MXO02415.3prime
ATGGTCTAGAAAGCTTGCGTGAGACTGCTTCATCTGCCAATGTGCACCGT
CATGGGGCAAAGGACTCTTCAGCAAGGGCGATATAAAAGTCCAAAGTCCT
CGTTGGCCCATTATTGTCTGGCAGTTCTTTCGGAAACCCAGATCGTAGGT
GCAATCAAAAATATTATAGTAGGTAGAGTTTTGGCTTAAAATCTGCATTT
GATATGCCAACATAAAGGCAGGCATATAGCTGGCGCTTATATTCAAGAGG
AAGGCAATGGTCTCAAAAGTATTGCCAGTATAATTTTGGAAAAAAGTCCT
AGTTATTAAATTAAAAATCACAGACGAGAGACTCATGAAGTTACCGCCAT
TCTGCAGGATAAACATACAAAATGTTGCAAAGCTTGTGACTAAGCCGAGC
GTTAAATAAAATGTGAACCAGAAGAAAAAGCGTTGATTATTGTGTCCAAT
GCAAGTGCCCGTGAATATACAGTGGTGGTCCCGTCTCAAAATGCAGGTGT
TGCACAAAACGCAGTGCCAGGATCGTGGCGATCTCAGCTTTTTACACGAT
TCGCAATAGTGCCACAGGGGCTCATCCTCTGGATTCGGGCATCGGGAGTC
CTTGGACAAGGTGTTTACCGATGAGCTAGTCATATAGCAGGCCAGCATGT
TACCAAGTATGTTGTGCGTTATGAAGGTGACCAATATCCAGTAGAGCTTG
TAAGCAATGTCGCCAAACACTTTGGGCGCAATGTAAAACATCTGCAGTGA
GAAGAAGAAAGCTGTGCTGCACAGGACGAAAACTATCGAAAGTGGATGCA
CTATCCTCACAAAGTTCTTCGGGTAGCGATTGGGCAAGTAATGGCAAAAT
CTATTCACGTAGCACATGTCGAC
MXO02415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 852 | CG17195-RA | 1..849 | 867..19 | 4195 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 18..866 | 867..19 | 4215 | 99.8 | Minus |
CG17196-RC | 881 | CG17196-RC | 257..426 | 573..404 | 325 | 80.1 | Minus |
CG17196-RB | 875 | CG17196-RB | 251..420 | 573..404 | 325 | 80.1 | Minus |
CG17196-RC | 881 | CG17196-RC | 587..759 | 222..50 | 295 | 78.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776333..25777181 | 19..867 | 4215 | 99.8 | Plus |
3R | 32079331 | 3R | 25775743..25775912 | 404..573 | 310 | 78.8 | Plus |
3R | 32079331 | 3R | 25775410..25775582 | 50..222 | 295 | 78 | Plus |
3R | 32079331 | 3R | 25774821..25774936 | 413..528 | 220 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:15 has no hits.
MXO02415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:22 Download gff for
MXO02415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:20 Download gff for
MXO02415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:26 Download gff for
MXO02415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 11..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:11 Download gff for
MXO02415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 11..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:11 Download gff for
MXO02415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776327..25777181 | 11..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:26 Download gff for
MXO02415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602049..21602903 | 11..867 | 99 | | Plus |