Clone MXO02416 Report

Search the DGRC for MXO02416

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:16
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17197-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02416.3prime Sequence

893 bp (733 high quality bases) assembled on 2006-12-21

> MXO02416.3prime
ATGGTCTAGAAAGCTTGCATCGGATACACGGAGAAACTGTAATTTTGGTG
AATGATGCTGAACACGTTTGATCTTCCACTGGGCACCATCATGGGGCAGA
GGACTCTTAACGGTGGGTGAGAGGAAAGTCCAAAAGCCTTTTCCGCCCAA
AATCAGCTTGAAATTCTCCCACAAGCCCAGATCGTAGGTATCACTGTAAA
ACTTATGCAAAGTGCCATTATTTTTAAGTACAGATAATTGCATAAGCACC
GAAGATACAGGGGCTGCAAATACGTAGGTGTTTAGTATAAGAGTGATGAC
CAGCCAAAATGGAGGTAAGTTATCCCTAGGGATATTTAGGAATATCAGGT
CCGAATAGCTAAAATACTTTAGGGTGGCAATAATATGGGTAGCCAAGGCC
ACACCAGTTCCCAAAGCCATGAAGAGGGTGAACCAGAAAAAGTATCTCTG
ATTATTGTGTCCGACGCAACTGGCAGTGAAAATGCAGTGGCGGTCCCGCT
TCAGAATGCAGCACTTGCACAATATACAGTGCCAGGATCTTGGAGGCATT
AGTTTTTCACAAACATCGCAGTAATGCCACTGGTGCTCCTCTTCCGGCTC
CGGAATTTGCCGATCCTTTGGCAGGCTCTCCACCGAAGTGCTTGTGATAT
GACACGCAAGCATATTGCCAAAGATATTATATGTTATAAAGATTGCCACT
AGCCAGCCGAGCTTGTACATGAATCCTTGAACATCAAACAATTGGGGTAC
CACGTAAAACATTTGCAGGACCACAAAAAAGATCGTTGTCACGATTACGA
ATAGTACTGCGGTCGGATGGGAGATTCGACGAATATCTTTGGATTTCGAC
GCGCCAAGTACTTGGTGCANGCCCATATCAAACACATGTCGAC

MXO02416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PA 951 CG17197-RA 60..824 829..65 3825 100 Minus
CG17197-PA 951 CG17197-RA 1..59 887..829 276 98.3 Minus
CG17197-PA 951 CG17197-RA 902..948 65..19 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..958 887..19 4314 99.8 Minus
CG17198-RB 1958 CG17198-RB 89..958 887..19 4314 99.8 Minus
CG17196-RC 881 CG17196-RC 221..412 624..433 465 82.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774458..25775281 65..887 4059 99.8 Plus
3R 32079331 3R 25775757..25775948 433..624 465 82.8 Plus
3R 32079331 3R 25774334..25774380 19..65 235 100 Plus
3R 32079331 3R 25776727..25776842 428..543 220 79.3 Plus
3R 32079331 3R 25777733..25777835 446..548 215 80.6 Plus
3L 28110227 3L 16861157..16861246 540..451 210 82.2 Minus
Blast to na_te.dros performed on 2014-11-28 21:09:55 has no hits.

MXO02416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:25 Download gff for MXO02416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 65..887 99   Minus
CG17197-PA 903..951 16..64 96   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:21 Download gff for MXO02416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 65..887 99 -> Minus
CG17197-PA 903..951 16..64 96   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:21 Download gff for MXO02416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..958 19..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:48 Download gff for MXO02416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..958 19..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:48 Download gff for MXO02416.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25774334..25774379 19..64 100 <- Plus
3R 25774458..25775281 65..887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:21 Download gff for MXO02416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600056..21600101 19..64 100 <- Plus
arm_3R 21600180..21601003 65..887 99   Plus

MXO02416.5prime Sequence

820 bp (792 high quality bases) assembled on 2006-12-21

> MXO02416.5prime
CAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGGCGCGTCGA
AATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTACTATTCGT
AATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTACGTGGTAC
CCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCTGGCTAGTG
GCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCGTGTCATAT
CACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAATTCCGGAGC
CGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAAAACTAATG
CCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATTCTGAAGCG
GGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAATAATCAGA
GATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTGGTGTGGCC
TTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTATTCGGACCT
GATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTGGCTGGTCA
TCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTATCTTCGGTG
CTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCATAAGTTTTA
CAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCTGATTTTGG
GCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGAGTCCTCTG
CCCCATGATGGTGCCCAGTG

MXO02416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PA 951 CG17197-RA 1..812 9..820 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..900 9..820 4060 100 Plus
CG17198-RB 1958 CG17198-RB 89..900 9..820 4060 100 Plus
CG17196-RC 881 CG17196-RC 221..412 273..464 465 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774470..25775281 820..9 4060 100 Minus
3R 32079331 3R 25775757..25775948 464..273 465 82.8 Minus
3R 32079331 3R 25776727..25776842 469..354 220 79.3 Minus
3R 32079331 3R 25777733..25777835 451..349 215 80.6 Minus
3L 28110227 3L 16861157..16861246 357..446 210 82.2 Plus
Blast to na_te.dros performed on 2014-11-28 19:59:50 has no hits.

MXO02416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:27 Download gff for MXO02416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..812 9..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:21 Download gff for MXO02416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..812 9..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:05 Download gff for MXO02416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..900 9..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:36 Download gff for MXO02416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..900 9..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:36 Download gff for MXO02416.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25774470..25775281 9..820 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:05 Download gff for MXO02416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600192..21601003 9..820 100   Minus