MXO02416.3prime Sequence
893 bp (733 high quality bases) assembled on 2006-12-21
> MXO02416.3prime
ATGGTCTAGAAAGCTTGCATCGGATACACGGAGAAACTGTAATTTTGGTG
AATGATGCTGAACACGTTTGATCTTCCACTGGGCACCATCATGGGGCAGA
GGACTCTTAACGGTGGGTGAGAGGAAAGTCCAAAAGCCTTTTCCGCCCAA
AATCAGCTTGAAATTCTCCCACAAGCCCAGATCGTAGGTATCACTGTAAA
ACTTATGCAAAGTGCCATTATTTTTAAGTACAGATAATTGCATAAGCACC
GAAGATACAGGGGCTGCAAATACGTAGGTGTTTAGTATAAGAGTGATGAC
CAGCCAAAATGGAGGTAAGTTATCCCTAGGGATATTTAGGAATATCAGGT
CCGAATAGCTAAAATACTTTAGGGTGGCAATAATATGGGTAGCCAAGGCC
ACACCAGTTCCCAAAGCCATGAAGAGGGTGAACCAGAAAAAGTATCTCTG
ATTATTGTGTCCGACGCAACTGGCAGTGAAAATGCAGTGGCGGTCCCGCT
TCAGAATGCAGCACTTGCACAATATACAGTGCCAGGATCTTGGAGGCATT
AGTTTTTCACAAACATCGCAGTAATGCCACTGGTGCTCCTCTTCCGGCTC
CGGAATTTGCCGATCCTTTGGCAGGCTCTCCACCGAAGTGCTTGTGATAT
GACACGCAAGCATATTGCCAAAGATATTATATGTTATAAAGATTGCCACT
AGCCAGCCGAGCTTGTACATGAATCCTTGAACATCAAACAATTGGGGTAC
CACGTAAAACATTTGCAGGACCACAAAAAAGATCGTTGTCACGATTACGA
ATAGTACTGCGGTCGGATGGGAGATTCGACGAATATCTTTGGATTTCGAC
GCGCCAAGTACTTGGTGCANGCCCATATCAAACACATGTCGAC
MXO02416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PA | 951 | CG17197-RA | 60..824 | 829..65 | 3825 | 100 | Minus |
CG17197-PA | 951 | CG17197-RA | 1..59 | 887..829 | 276 | 98.3 | Minus |
CG17197-PA | 951 | CG17197-RA | 902..948 | 65..19 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..958 | 887..19 | 4314 | 99.8 | Minus |
CG17198-RB | 1958 | CG17198-RB | 89..958 | 887..19 | 4314 | 99.8 | Minus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 624..433 | 465 | 82.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774458..25775281 | 65..887 | 4059 | 99.8 | Plus |
3R | 32079331 | 3R | 25775757..25775948 | 433..624 | 465 | 82.8 | Plus |
3R | 32079331 | 3R | 25774334..25774380 | 19..65 | 235 | 100 | Plus |
3R | 32079331 | 3R | 25776727..25776842 | 428..543 | 220 | 79.3 | Plus |
3R | 32079331 | 3R | 25777733..25777835 | 446..548 | 215 | 80.6 | Plus |
3L | 28110227 | 3L | 16861157..16861246 | 540..451 | 210 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:09:55 has no hits.
MXO02416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:25 Download gff for
MXO02416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 65..887 | 99 | | Minus |
CG17197-PA | 903..951 | 16..64 | 96 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:21 Download gff for
MXO02416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 65..887 | 99 | -> | Minus |
CG17197-PA | 903..951 | 16..64 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:21 Download gff for
MXO02416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..958 | 19..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:48 Download gff for
MXO02416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..958 | 19..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:48 Download gff for
MXO02416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774334..25774379 | 19..64 | 100 | <- | Plus |
3R | 25774458..25775281 | 65..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:21 Download gff for
MXO02416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600056..21600101 | 19..64 | 100 | <- | Plus |
arm_3R | 21600180..21601003 | 65..887 | 99 | | Plus |
MXO02416.5prime Sequence
820 bp (792 high quality bases) assembled on 2006-12-21
> MXO02416.5prime
CAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGGCGCGTCGA
AATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTACTATTCGT
AATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTACGTGGTAC
CCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCTGGCTAGTG
GCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCGTGTCATAT
CACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAATTCCGGAGC
CGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAAAACTAATG
CCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATTCTGAAGCG
GGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAATAATCAGA
GATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTGGTGTGGCC
TTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTATTCGGACCT
GATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTGGCTGGTCA
TCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTATCTTCGGTG
CTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCATAAGTTTTA
CAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCTGATTTTGG
GCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGAGTCCTCTG
CCCCATGATGGTGCCCAGTG
MXO02416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PA | 951 | CG17197-RA | 1..812 | 9..820 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..900 | 9..820 | 4060 | 100 | Plus |
CG17198-RB | 1958 | CG17198-RB | 89..900 | 9..820 | 4060 | 100 | Plus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 273..464 | 465 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774470..25775281 | 820..9 | 4060 | 100 | Minus |
3R | 32079331 | 3R | 25775757..25775948 | 464..273 | 465 | 82.8 | Minus |
3R | 32079331 | 3R | 25776727..25776842 | 469..354 | 220 | 79.3 | Minus |
3R | 32079331 | 3R | 25777733..25777835 | 451..349 | 215 | 80.6 | Minus |
3L | 28110227 | 3L | 16861157..16861246 | 357..446 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:50 has no hits.
MXO02416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:27 Download gff for
MXO02416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..812 | 9..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:21 Download gff for
MXO02416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..812 | 9..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:05 Download gff for
MXO02416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..900 | 9..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:36 Download gff for
MXO02416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..900 | 9..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:36 Download gff for
MXO02416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774470..25775281 | 9..820 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:05 Download gff for
MXO02416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600192..21601003 | 9..820 | 100 | | Minus |