Clone Sequence Records
MXO02417.3prime Sequence
921 bp (835 high quality bases) assembled on 2006-12-21
> MXO02417.3prime
ATGGTCTAGAAAGCTTGCGACGGCACGCTTCGATTTCCATCGGGTGCCAT
TGTGGGGCAGGGGACTTTTGATATTTGGCGATAGGCAAGTCCATAATCGC
CGACTTCCCAGGATCAGGGTCAAATTATTCCCTAATCCAAGGTCATAGGT
TCGATCAGAATAATCGTGCATTACTGAGTTTTTGATGACCGTCACTACTT
GGGTGCAAAACAGTGCTGCTGGAAAGAGAACGGCGAATATGTTGACACCT
AAGACACTGACTATTCGATAGAATATCACTAATTCTTTTCTACCAGGATT
CATGTAAGCATTAAAAATAATGTAATTGGCTTTGACTAAATCAAAAAATC
CAACACCGTGCTTATGGGCCAACATGAAGTTATCAAATAAGGCCACTGCG
CTACCGATGGCCGCGTAAAATGAGAACCATATGAAATATCGCTGATTATT
GTGTCCCACGCAGTTGCCCACAAAATTGCAGTGGTGATCGCGTTTCAGAA
TGCACGCATCACAGATGTTGCAGTGCCAGGACCTTGGCGGTACATTCCTT
TGGCATATTTTGCAAAAATGCCACAGGTGCTCTTCACCTTTCATTGGCTG
CTGCATTTGCGGCGGCAAAGAGTCCACAGTGTTCAACGTCGTGACGCACA
GCCTTAAGTTTTCCAGAATATTGTAGACAATCCAAGTGGTGACTAAAAAA
TGAACCGCCTGTCCAAACAATCCCAAAAACTGTGGCATTACGTAGAAAGC
TTCGAAGAAGTAGAAAAACAAGATTATGCAGACATTTATGGATACTCCCA
TGATATCTGTCCAGGATTTGATGGCCCCCACGCGTCTTGGGATGTTGATG
GTCTGCATTTGAACTTGTGATTGCATGATGCCCCGAAGCTGTACAAATAC
ATGAGAAAATTTCATGTCGAC
MXO02417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17198-PA | 900 | CG17198-RA | 1..897 | 915..19 | 4460 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 961..1857 | 915..19 | 4470 | 99.9 | Minus |
| CG17198-RB | 1958 | CG17198-RB | 961..1857 | 915..19 | 4470 | 99.9 | Minus |
| CG17198-RA | 1066 | CG17198-RA | 69..965 | 915..19 | 4470 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25773435..25774331 | 19..915 | 4470 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:46 has no hits.
MXO02417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:28 Download gff for
MXO02417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 1..900 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:22 Download gff for
MXO02417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 1..900 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:20 Download gff for
MXO02417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 64..965 | 19..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:31 Download gff for
MXO02417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 64..965 | 19..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:31 Download gff for
MXO02417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25773435..25774333 | 19..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:20 Download gff for
MXO02417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21599157..21600055 | 19..921 | 99 | | Plus |
MXO02417.5prime Sequence
914 bp (784 high quality bases) assembled on 2006-12-21
> MXO02417.5prime
CAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGGGCATCATG
CAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGCGTGGGGGC
CATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGTCTGCATAA
TCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCACAGTTTTTG
GGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGGATTGTCTA
CAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAACACTGTGG
ACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAGAGCACCTG
TGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGGTCCTGGCA
CTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCACTGCAATT
TTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCATATGGTTC
TCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGATAACTTCAT
GTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAAAGCCAATT
ACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAATTAGTGATA
TTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCCGTTCTCTT
TCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAAAAACTCAG
TAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAGGGAATAAT
TTGACCCTGATCCTGAGAAGTCGGCGATTATGGACTTGCCTATCGCCAAA
TATCAAAAGTCGCCTGCCCCACAATGGCACCCGATGGAAATCGAAGCGTG
CCGTCGCAAGCTTT
MXO02417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17198-PA | 900 | CG17198-RA | 1..897 | 9..905 | 4435 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 961..1857 | 9..905 | 4455 | 99.8 | Plus |
| CG17198-RB | 1958 | CG17198-RB | 961..1857 | 9..905 | 4455 | 99.8 | Plus |
| CG17198-RA | 1066 | CG17198-RA | 69..965 | 9..905 | 4455 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25773435..25774331 | 905..9 | 4455 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:34 has no hits.
MXO02417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:30 Download gff for
MXO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 1..900 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:22 Download gff for
MXO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 1..900 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:39 Download gff for
MXO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:56 Download gff for
MXO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:56 Download gff for
MXO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25773435..25774331 | 9..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:39 Download gff for
MXO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21599157..21600053 | 9..905 | 99 | | Minus |
